Plant FIBer expression Database

Lus10001512 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26620 51 / 4e-10 unknown protein
AT3G05858 47 / 4e-08 unknown protein
AT1G48325 35 / 0.0007 Expressed protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031447
[exp]
130 / 5e-41 AT5G26620 53 / 1e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G001900
[exp]
52 / 2e-10 AT3G05858 55 / 3e-11 unknown protein
Potri.013G001800
[exp]
52 / 2e-10 AT3G05858 55 / 3e-11 unknown protein
Potri.013G002000
[exp]
52 / 3e-10 AT3G05858 54 / 5e-11 unknown protein
Potri.005G002600
[exp]
52 / 4e-10 AT5G26620 49 / 4e-09 unknown protein
Potri.005G002500
[exp]
52 / 4e-10 AT5G26620 49 / 4e-09 unknown protein
Potri.010G003900
[exp]
44 / 3e-07 AT3G05858 72 / 5e-18 unknown protein
PFAM info
Representative CDS sequence
>Lus10001512 pacid=23157255 polypeptide=Lus10001512 locus=Lus10001512.g ID=Lus10001512.BGIv1.0 annot-version=v1.0
ATGGGAGGAAAGGGGAAATCGTCGTCCAAGTCCGGGGGCTCATTCACATCAGTGTTCAGCCAGCTGTTCAGGCGAGGAGGCGGCCGGCGATCATCGTCGT
CGTACTACGGAGACGACGACCAGGTGCACGGTGGATGGAGGGCGTGGACTAGCGACGAGGACAAAGCGGGGAGATACGTGGCGGACCCTCGAATCGACAC
GAAAGCTTCCGCTTTCATCGCTCACTTCCATGCCGCCCGCTTCTCCGAATCCGAACAGAAGATTTTCCAATGCGCCAATTGA
AA sequence
>Lus10001512 pacid=23157255 polypeptide=Lus10001512 locus=Lus10001512.g ID=Lus10001512.BGIv1.0 annot-version=v1.0
MGGKGKSSSKSGGSFTSVFSQLFRRGGGRRSSSSYYGDDDQVHGGWRAWTSDEDKAGRYVADPRIDTKASAFIAHFHAARFSESEQKIFQCAN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G26620 unknown protein Lus10001512
[exp]
0 1
AT1G11600 CYP77B1 "cytochrome P450, family 77, s... Lus10007659
[exp]
1.0 0.9364
AT4G37680 HHP4 heptahelical protein 4 (.1.2) Lus10010605
[exp]
2.2 0.8686
AT1G15170 MATE efflux family protein (.1... Lus10029694
[exp]
5.8 0.8920
AT4G27290 S-locus lectin protein kinase ... Lus10006772
[exp]
6.9 0.8718
AT2G23440 unknown protein Lus10009345
[exp]
9.7 0.8076
AT2G39855 unknown protein Lus10009870
[exp]
10.2 0.8274
AT3G12890 ASML2 activator of spomin::LUC2 (.1) Lus10031770
[exp]
10.4 0.8202
AT5G59320 LTP3 lipid transfer protein 3 (.1) Lus10026418
[exp]
11.6 0.8754
AT4G16780 HD ATHB2, HAT4, AT... ARABIDOPSIS THALIANA HOMEOBOX ... Lus10004377
[exp]
16.5 0.8644
AT2G16630 Pollen Ole e 1 allergen and ex... Lus10042394
[exp]
17.5 0.8648

Lus10001512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.