Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26610 297 / 8e-101 D111/G-patch domain-containing protein (.1.2.3) AT2G42330 58 / 4e-09 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT3G52350 54 / 8e-09 D111/G-patch domain-containing protein (.1) AT1G17070 54 / 4e-08 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT5G08535 48 / 7e-07 D111/G-patch domain-containing protein (.1.2) AT3G52120 48 / 5e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) AT3G54230 47 / 7e-06 SUA suppressor of abi3-5 (.1.2) AT3G57910 46 / 1e-05 D111/G-patch domain-containing protein (.1) AT1G30480 41 / 0.0006 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031446 [exp] 409 / 7e-145 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10010955 [exp] 55 / 4e-08 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10000930 [exp] 54 / 9e-08 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10002252 [exp] 54 / 9e-08 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10031369 [exp] 54 / 1e-07 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10037485 [exp] 53 / 1e-07 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10015703 [exp] 49 / 3e-06 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10021033 [exp] 47 / 6e-06 AT3G57910 269 / 4e-90 D111/G-patch domain-containing protein (.1) Lus10023819 [exp] 47 / 8e-06 AT3G57910 273 / 1e-91 D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G002100 [exp] 352 / 1e-122 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.005G002700 [exp] 350 / 9e-122 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.013G076000 [exp] 55 / 3e-08 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.008G003100 [exp] 52 / 3e-08 AT5G08535 107 / 5e-31 D111/G-patch domain-containing protein (.1.2) Potri.004G081800 [exp] 54 / 5e-08 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.019G043200 [exp] 54 / 6e-08 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.001G269900 [exp] 51 / 5e-07 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.016G048600 [exp] 50 / 8e-07 AT3G57910 215 / 1e-69 D111/G-patch domain-containing protein (.1) Potri.009G064600 [exp] 46 / 1e-05 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10001513 pacid=23157238 polypeptide=Lus10001513 locus=Lus10001513.g ID=Lus10001513.BGIv1.0 annot-version=v1.0 ATGCGTATTCTCCTTCAAAAGGAATGGGAAATTTATGTTATATTGCTTTGGCAGGAATCAGTGATTGAGGATCTGGGACAGGAGTTCTGCTTACCTAAAA CCCACAGGCCAACTGAGAATGTGGATCTGGAGAATGTTGAACAAGCATCCCTGGAGACGAGGTTGACATCTACTAATGTTGGTTTCAGACTTCTTCAGAA AATGGGATGGAAAGGGAAGGGCCTTGGCAAAGATGAGCAAGGAATAGTTGAGCCGATCAAGTCAGGAATTAGAGATGCAAAGTTGGGGCTTGGAAAACAA GAGGAAGACGACTACTTTACTGCTGAAGAAAATATTCAACGCAGGAAACTCGATATTGAAGTTGAGGAAACCAAAGAGCATGCAAAGAAGCGTGAGGTCC TAGCAGAACGCGAGCAGAAAATCCAGACCGAGGTGCAAGAAATACGGAAGGTGTTCTACTGTGATCTTTGCAAAAAGCAATACAAATTGGCTATGGAATT TGAGGTCCACCTGAGTTCATATGATCACAATCACCGCAAGAGATTCAAGGAGATGAGAGAGATGCACGGGAGTAGTAGCCGTGATGATCGACAAAAACGA GAGTTACAGAGACAGGAAAGAGAAATGGCCAGGTTTGCTCAAATGGCTGATGCACATAGACAGCAGCAGCAGCTTGAGCTCCAACAAGAAGAATCTGGAT CAGCAGTCAAAACTGTGACTTCTTCACTTGGTGATCAGGATCAACGTAAGACATTGAAATTCGGGTTTTCATCTAAAAGTGGCGGTTCAAAGAAGGCGAC TCCTACTGCTAGTGCTGCTAAAAGGCCAAAGGTTCTTCTCGCCTCTGTTTTGAAGGACGACAGCGACGAAGGGTAG
AA sequence Show only first row Show all	>Lus10001513 pacid=23157238 polypeptide=Lus10001513 locus=Lus10001513.g ID=Lus10001513.BGIv1.0 annot-version=v1.0 MRILLQKEWEIYVILLWQESVIEDLGQEFCLPKTHRPTENVDLENVEQASLETRLTSTNVGFRLLQKMGWKGKGLGKDEQGIVEPIKSGIRDAKLGLGKQ EEDDYFTAEENIQRRKLDIEVEETKEHAKKREVLAEREQKIQTEVQEIRKVFYCDLCKKQYKLAMEFEVHLSSYDHNHRKRFKEMREMHGSSSRDDRQKR ELQRQEREMARFAQMADAHRQQQQLELQQEESGSAVKTVTSSLGDQDQRKTLKFGFSSKSGGSKKATPTASAAKRPKVLLASVLKDDSDEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	0	1
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	2.0	0.9393
AT3G11290			unknown protein		Lus10002039 [exp]	2.4	0.9226
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	2.8	0.9234
AT2G45990			unknown protein		Lus10036369 [exp]	4.2	0.9087
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	6.5	0.9143
					Lus10024694 [exp]	7.7	0.8984
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10027997 [exp]	8.4	0.8628
AT5G23250			Succinyl-CoA ligase, alpha sub...		Lus10028767 [exp]	9.9	0.8766
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026718 [exp]	12.0	0.8953
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	13.2	0.9100

Compare expression of checked genes

Lus10001513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.