Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26600 588 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G62130 539 / 0 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G08490 50 / 2e-06 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031445 [exp] 809 / 0 AT5G26600 608 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10009974 [exp] 551 / 0 AT3G62130 658 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038033 [exp] 551 / 0 AT3G62130 657 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10031670 [exp] 54 / 2e-07 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Lus10039480 [exp] 47 / 3e-05 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003000 [exp] 630 / 0 AT5G26600 650 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.013G002400 [exp] 627 / 0 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.014G112700 [exp] 549 / 0 AT3G62130 682 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G187200 [exp] 548 / 0 AT3G62130 685 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.009G066000 [exp] 57 / 2e-08 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10001514 pacid=23157242 polypeptide=Lus10001514 locus=Lus10001514.g ID=Lus10001514.BGIv1.0 annot-version=v1.0 ATGTCATTTAAGCAACAGAAGAACAAAGCACTTCCTTTCTTCCTCCTCCTTTCAACTAGTTATCAGTCTTCTTTCCTTTTCTCTCGCCGTCAAATTCCCC AGATGAACGGCGGCGACGCCACCTCGGAATTCTCCCACCACGACCCATCCGTGGCGCGAATCAACAACTGCACGCGAATCAACAACGGCAGCTGCGGTTG CCCCCCCCGCGCCTCCACCGCCGCGCAGCAAGACTGGCAGGTAAAGTTCCTCCGCCAACCCGACCACTTCTTCCTCAACCTCCTCCAGCCGGCCATCGCC CGATCACGCTCCCTCGTCGCGTCCTTAGTCAACGCGCGCCACGTCGACGAGATTTCCTTAGTGGACAACGCCACCACCGCCGTCGCCATCTTCCTCCAGC ACTGCTCCTGGTCGTTCGCCGAGGGTAGATTCTCCACCGGAGACGCCGCCGTGATGCTTCACCACGCCTACGGCGCGGTGAAGAAATCGGTAGAGGCGTA CATCACCAGAGCCGGCGGCCACGTCATCGAGGTCGACTTACCTTTCCCTGTCCGATCCGAGGAGGAGATCGTCGCCAATTTCCGTAAAGCACTGGCGAAG GGGAAAGAGGAAGGGAGGAAAATAAGGGTTGCGGTGATCGATCATGTGACGTCCATGCCGACGGTGGTGATCCCGGTCAAGGATCTGGTCAAAATCTGCA GAGAGGAAGGCGTTGAGCAAGTGTTCGTCGACGCCGCTCACGGAATTGGCTGCGTCGACGTTGATATGCAGGAGATCGGAGCTGATTTCTACACTAGTAA TCTCCATAAGTGGTTCTTTTGCCCTCCTTCTGTAGCTTTCCTCTACTGCAGGAAGGAATTCGATAATCATCATCACCCGCAACTGCATCATCCGGTGGTG TCACACGAGTATGGCAATGGATTGCCGGTGGAGAGCGGCTGGATAGGGACGAGGGATTACAGCGCGCAGCTGGTTGTGCCGCGAGCAATGGAGTTCGTCA ACAGCTATCCAGGAGGGATGGAAGGGATCAAGGAGAAGAACCATAAAGCCATCGTCGAAATGGGCGAAATGCTGGCTGAAGCTTGGGGGACACACTTGGG TTGCCCTCCACACATGTGTTCGAGTATGGTGATGGTCGGATTGCCGCCTTTGTTAGGAATTCGAAGCGAATCCGATGCATTGAAGCTCAGAGTTCATCTC CGGGATTGCTTCAGAGTGGAAGCCCCGATCTACTTCAACAAGCAGCAACGGTCCGATGAGAAGGAAGATGATGGAGATGCTGTGATTATAACTGGTTACG TTAGGATTTCTCATCAGGTGTATAATAAGGTTGAAGACTATCACAGGCTTAGGGATGCTGTGAACCAATTGGTTACAGATCGGTTCACTTGTGCATCGCT GCCCGATTCGAAATGA
AA sequence Show only first row Show all	>Lus10001514 pacid=23157242 polypeptide=Lus10001514 locus=Lus10001514.g ID=Lus10001514.BGIv1.0 annot-version=v1.0 MSFKQQKNKALPFFLLLSTSYQSSFLFSRRQIPQMNGGDATSEFSHHDPSVARINNCTRINNGSCGCPPRASTAAQQDWQVKFLRQPDHFFLNLLQPAIA RSRSLVASLVNARHVDEISLVDNATTAVAIFLQHCSWSFAEGRFSTGDAAVMLHHAYGAVKKSVEAYITRAGGHVIEVDLPFPVRSEEEIVANFRKALAK GKEEGRKIRVAVIDHVTSMPTVVIPVKDLVKICREEGVEQVFVDAAHGIGCVDVDMQEIGADFYTSNLHKWFFCPPSVAFLYCRKEFDNHHHPQLHHPVV SHEYGNGLPVESGWIGTRDYSAQLVVPRAMEFVNSYPGGMEGIKEKNHKAIVEMGEMLAEAWGTHLGCPPHMCSSMVMVGLPPLLGIRSESDALKLRVHL RDCFRVEAPIYFNKQQRSDEKEDDGDAVIITGYVRISHQVYNKVEDYHRLRDAVNQLVTDRFTCASLPDSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10001514 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	6.3	0.8731
					Lus10006539 [exp]	14.8	0.8777
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10028972 [exp]	19.1	0.8459
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	20.1	0.8693
AT3G12830			SAUR-like auxin-responsive pro...		Lus10031754 [exp]	28.1	0.8070
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	30.2	0.8581
					Lus10035642 [exp]	41.4	0.8338
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10001214 [exp]	46.7	0.8178
AT2G38640			Protein of unknown function (D...		Lus10010681 [exp]	51.1	0.8518
AT3G61200			Thioesterase superfamily prote...		Lus10018847 [exp]	51.5	0.8453

Compare expression of checked genes

Lus10001514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.