Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26770 376 / 1e-130 unknown protein AT1G09470 320 / 2e-108 unknown protein AT3G05830 313 / 1e-105 unknown protein AT1G09483 100 / 4e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031444 [exp] 600 / 0 AT5G26770 417 / 7e-147 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003600 [exp] 455 / 1e-161 AT5G26770 375 / 5e-130 unknown protein Potri.013G003400 [exp] 445 / 1e-157 AT5G26770 374 / 1e-129 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001515 pacid=23157252 polypeptide=Lus10001515 locus=Lus10001515.g ID=Lus10001515.BGIv1.0 annot-version=v1.0 ATGTCAGTTCAGGGAAGAAGATCTTCATGCACCATCTCAGTTTCTACTGATGGAGAGATTGATCCATTGTTGAAAGATTTGAATGAGAAGAAGCAGCTCT TTAGGCGCAACGTTGTCTCTTTAGCTGCTGAGCTGAAGGATGTCAGAAGTCGCCTCTCATCTCAAGAGCAGTCATTTGCTAAAGAATCCTTCAACAGACA GGAAGCAGAAAACAAAGCCAGGAGCATGGAAGAGCAGATTAGTAGACTCCACCATACTTTGGAAGAGAGGAATTCTCAGCTTCATGCCTCTACTTCTACT GCCGAGCAGTACCTGAAGGATTTGGACAGTCTAAGATCGGAACTTGCTGCCACTCAAGCAACCGCTGACGCAAGTGCAACAGCGGCGCAGTCCACACAGC TACAATGCTTGGCATTATTGAAGGAGCTAGATTCGAAGAACACTTCGCTAAAAGAGAACGAGGACCACGTAACTAGGCTAGGAGAGCAGTTGGATAGCTT GCGCAAGGATCTTCAAGAAAGTGAGAACTCTCAGAAGCAACTTAAAGATGAAGTCTTGAGAATTGAGCACGACATTATGCAAGCGATCGCCTCTGCTGGG GACAGCAAAGACTGCGAGCTGAGGAAGATTCTGGATGAGGTGTCCCCTAAGAATTTTGAAAAAATCAATAAGCTTTTGATTGGTAAGGACGAAGAGATAG TGAAGTTGAGAGATGAAATCCGGATTATGTCTGCTGACTGGAAGGTTAAGACCAATGATTTGGAGTCTCAGCTAGAGAAACAGAGACGAGCTGATCAAGA ACTGAGAAAGAGAGTTTTAAAGTTGGAATTCTGTCTTCAGGAAGCTCGTTCTCAGACAAGAAAGCTCGTCAGGATGGGGGAACGGAGAGACAGAGCTATT AAAGAACTCCAGAACCAATTAGCAGCGAAGCAGACACTCGGAGGAGGAGGAAATAGCAACAAAAAGCAGAACTTCTGGGAAACATCTAGCTTCAAGATTG TAGCTTCCATGTCCATGTTAGTACTGGTCATGTTCTCGAAGCGATGA
AA sequence Show only first row Show all	>Lus10001515 pacid=23157252 polypeptide=Lus10001515 locus=Lus10001515.g ID=Lus10001515.BGIv1.0 annot-version=v1.0 MSVQGRRSSCTISVSTDGEIDPLLKDLNEKKQLFRRNVVSLAAELKDVRSRLSSQEQSFAKESFNRQEAENKARSMEEQISRLHHTLEERNSQLHASTST AEQYLKDLDSLRSELAATQATADASATAAQSTQLQCLALLKELDSKNTSLKENEDHVTRLGEQLDSLRKDLQESENSQKQLKDEVLRIEHDIMQAIASAG DSKDCELRKILDEVSPKNFEKINKLLIGKDEEIVKLRDEIRIMSADWKVKTNDLESQLEKQRRADQELRKRVLKLEFCLQEARSQTRKLVRMGERRDRAI KELQNQLAAKQTLGGGGNSNKKQNFWETSSFKIVASMSMLVLVMFSKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26770			unknown protein		Lus10001515 [exp]	0	1
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	8.7	0.9399
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	11.7	0.9204
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	13.5	0.8935
					Lus10038288 [exp]	14.2	0.8866
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	18.5	0.8761
AT5G26800			unknown protein		Lus10031426 [exp]	26.4	0.8684
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	29.9	0.9173
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	33.3	0.9172
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	33.5	0.9086
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	33.7	0.9162

Compare expression of checked genes

Lus10001515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.