Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30933 120 / 1e-32 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G29380 112 / 6e-28 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G09460 110 / 5e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G55180 107 / 3e-25 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 103 / 6e-24 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 102 / 1e-23 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 96 / 3e-21 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G67460 91 / 8e-20 O-Glycosyl hydrolases family 17 protein (.1) AT4G05430 86 / 9e-20 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G66855 84 / 2e-19 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031443 [exp] 158 / 7e-44 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10007342 [exp] 123 / 3e-32 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 119 / 8e-31 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10004546 [exp] 113 / 3e-28 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004600 [exp] 113 / 5e-28 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015259 [exp] 109 / 3e-27 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10025379 [exp] 102 / 9e-25 AT1G29380 140 / 1e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015151 [exp] 104 / 4e-24 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040600 [exp] 102 / 2e-23 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G003500 [exp] 135 / 2e-34 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 135 / 2e-34 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.002G059600 [exp] 123 / 1e-32 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.001G353400 [exp] 117 / 7e-30 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G202400 [exp] 115 / 1e-29 AT2G30933 140 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.011G078500 [exp] 114 / 2e-28 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G094400 [exp] 105 / 1e-24 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G111000 [exp] 95 / 1e-22 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 92 / 8e-22 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 92 / 1e-21 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10001516 pacid=23157251 polypeptide=Lus10001516 locus=Lus10001516.g ID=Lus10001516.BGIv1.0 annot-version=v1.0 ATGGTCTCCTCTCAGCTCCTTCTCCTCTTCCTCCTCTGCTCCTCTCTCCTTACTCTGCCTACTTCCGGAACAGGAACGCTAGCGGGTTTGTTCTACAATG GCGGAAAGAATGCTGCGAGTTCATCAAAGATCTTGTCTTTCCTTCCTTCCTCTCAGATTCGAGGTCCTAGGTATACAAGCTGGGGGATTCATCAACTGTT TCCTTCTTCTAGGAGGGAGCTAAGTTCAAAGGTGGAAACTTTTGTTAACAAAGATGGAGTTACAATCCCTACTACTACCCCTACAATCATTACTGTCCCT GCAACTATCCCTACTCCCACTACAGCTACCAACAATCCTCCTGTAACTCCTCTCCCTCTTCCCACCACCATTCCTCCCACAAACCCTGCCGCCACAACTC CACCAGTTACCGTTCCTGGAGGTGTAGGGCAGCAACCAGTTACCAATCCAGCCACTACTTACCCTGTCCCTTCAACTGGTACGGTACCAAACCCTGCTGG AACTGTACCACCACCTGCTGGTGCTGTACCAAACCCTGCTGTTGCTCCACCTGCAGTGACAAACCCTCCTGCTGGAACGACCAATGCTCCGGGGGTTTCG GGGCAGAGCTGGTGTGTGGCGAAAGGGAGTGTCTCGGTGGCTTCATTGCAGGCGGCGCTGGATTATGCATGTGGAACTGGGGGTGTGGATTGTTCACAAA TCCAGCCAGGTGCTGCTTGTTATAATCCGAATACTCTTCAGAACCATGCTTCTTTTGCTTTTAACAACTATTATCAGAAGAATCCTGTGGCTACGAGCTG TGATTTTGGTGGGACTGCTGTTGTCGTCAGTAGCAACCCAAGTTCTGGAACATGCACGTATCCTTCATCCTCGTCATCTTCATCATCACCATCATCTTCG TCGACTTCGTCTCCCCCCACGACGACAGCAACCTCTCCATTGACGCCAACATCTCCCACACCATCGACATCAACTACGAATCCCGTCACCACTAACCCTA CCACGACTACATCTCCATCCGGAAACGGAACATCAGGCACCGCTGTTACTCCTCCATCAGTGTTGAACTCAAGCAGCAGCAGCCCTACTGCTGGCACTGC CAACGTTTTCGGATTCGACAATCCTCCAGGAGTCACCACCGAAGGCCCAATGGCTTCCGACTCGGCTGCTTTGCAACCGTTGCTCCGACGTGTGGTTCTG GCCGTGTGTTTGATAGCCGGAGCAGTAGTTTTTGACGTGTAG
AA sequence Show only first row Show all	>Lus10001516 pacid=23157251 polypeptide=Lus10001516 locus=Lus10001516.g ID=Lus10001516.BGIv1.0 annot-version=v1.0 MVSSQLLLLFLLCSSLLTLPTSGTGTLAGLFYNGGKNAASSSKILSFLPSSQIRGPRYTSWGIHQLFPSSRRELSSKVETFVNKDGVTIPTTTPTIITVP ATIPTPTTATNNPPVTPLPLPTTIPPTNPAATTPPVTVPGGVGQQPVTNPATTYPVPSTGTVPNPAGTVPPPAGAVPNPAVAPPAVTNPPAGTTNAPGVS GQSWCVAKGSVSVASLQAALDYACGTGGVDCSQIQPGAACYNPNTLQNHASFAFNNYYQKNPVATSCDFGGTAVVVSSNPSSGTCTYPSSSSSSSSPSSS STSSPPTTTATSPLTPTSPTPSTSTTNPVTTNPTTTTSPSGNGTSGTAVTPPSVLNSSSSSPTAGTANVFGFDNPPGVTTEGPMASDSAALQPLLRRVVL AVCLIAGAVVFDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	0	1
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	2.0	0.9145
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	2.8	0.8957
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	4.9	0.8961
AT2G39870			unknown protein		Lus10040247 [exp]	5.7	0.9028
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	5.9	0.8736
AT3G11590			unknown protein		Lus10017001 [exp]	6.7	0.8548
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10035600 [exp]	7.1	0.8543
AT1G76660			unknown protein		Lus10016050 [exp]	7.3	0.8646
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	11.5	0.8645
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	12.0	0.8395

Compare expression of checked genes

Lus10001516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.