Plant FIBer expression Database

Lus10001517 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09450 533 / 0 AtHaspin Haspin-related gene, Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031442
[exp]
965 / 0 AT1G09450 629 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G003400
[exp]
621 / 0 AT1G09450 610 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1)
Potri.013G003600
[exp]
473 / 1e-161 AT1G09450 462 / 6e-158 Haspin-related gene, Protein kinase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF12330 Haspin_kinase Haspin like kinase domain
Representative CDS sequence
>Lus10001517 pacid=23157240 polypeptide=Lus10001517 locus=Lus10001517.g ID=Lus10001517.BGIv1.0 annot-version=v1.0
ATGGCCGAAGAGCAATGCCGCGGCGGAGGAGGAGGAGGAGACCGCCATCGTCTGAAGCAGCAGCAACAGGAGCAAGCCATTTACCGACGCAGACGCCCCG
CCGCTCAACCCCAATCTCACCTGGAACCTCCTGCTCCACTGAATCAGTCTCACTTGAGCAATCTGAATCGTCCGAGTTTGGTTCCTCCTCCAGTCAGGCG
AGTTAGCTGGAATCGTTCTCTGTCCATCAGAGGGAGGGTTAGCATAGCCGTGGTAGCTTCTGTGGAAGATGGCCCTCAAAAGATGAATAAGCTGAAGCTG
CCCAGGGGAAATGGGAAGGGAAAGGGAAAGCCACCTGTTCATAGGCTGCCTCCTCAAAACTTTGAGAAGGAGCGGGAATACTTTAAGGAAGTTGATGATT
TTGAATTGCTGGAGGAGAGCCCTTCTCCCAAGCATCCTTCCACCTGGGTCGCATCGAATCCAACTGATGCTGATCCTGTCCAGCCTCTCCCTCCCAGATT
ACCCAATTGGTTAATCTCACACAACTTCAGGTCCAGTTCTGATCTTTCCACTACATTGTCTAAGATATTAGGTACTCCAGACATGCCTTCGCAACCTATC
TACACGGATGGTTTTGACAACTTCGAATTGAAAAACCCAGAAAAGGCATCCTTCAAACCTCATTCCAATATGCATTCCAGCGTAGCAAGAATCCATTCTT
ACCTGCCACATAAAGCTGTTACTGGGATAGAGAATGGTAGGTTCTCTGGAGAGGGTGTTCCTGGTGTTGAATTTGAAGACATTGATGCTGCTGTTAGGAA
GTTGTCTTTGGCATCGACATCTTCTTCATTGGATCTTGACTTCGTGGATCCTTTTGCTGCTCTTTTGGCTTACTGCGGTCAATCAGCCCCATCAACACTA
CTGGATGTGTTCTCCAAATACTGTCACCCTGATGATATAGTGAAAGTGGGTGAAGGTACTTATGGTGAAGCCTTTAAAGTGGGGAATACTGTTTGTAAAC
TAGTACCGATTGATGGTGACTTGCGAGTGAATGGAGAAGTGCAAAAGAGATCAGAAGAACTACTTGAAGAGGTCATTCTTTCCAAGACTCTTAATGGACT
GAGAAGCGGTGCTTCGCTACAAAATGCATGCACAACATTCATTGAGACTCTGGAGTTGAAGGTATGCCAAGGTCCTTATGATCCTGCATTGATTAGGGCA
TGGGAAGAATGGGATGAACAGAACAATTCCGAAAATGATCACCCTAGGGGTTTCTCGGCGAAACAGCGGTATGTTGTATTCATATTGCAACATGGTGGCA
AAGACCTTGAAAGCTTTGTGCTTTTGAACTTCGATGAAGCTCGTAGCTTACTGGTACAGATAGTGTCTGCATTTGCAGTTGCTGAAGCAGCATATGAATT
CGAACATCGCGATCTTCACTGGGGAAACATTCTTCTAAGTCGAAATGAATCTGCCAATCTCCAGTTTACCCTTGAAGGAAAGAAAAGATTTCTCAAAACA
TTTGGCATGTCAGTGTCAGTAATCGATTTCACCCTGTCCCGAATTAACACCGGTCAGGACATACTGTTCTTCGATATGTCATCTGATCCAGACTTGTTCA
AGGGTCCTAAGGGAGATAGACAGGCAGAAACATATAGAAAGATGAAGGAGGTAACAAAAGACTCCTGGGAAGGAAGCCATCCAAGGACAAATATATTATG
GCTGCTTTACTTGGTGGATATCTTGCTCTTGAAGAAATCCTATGAACGTTCGTCTAAACATGAAAGAGAGATGCGTTCACTGAAGAAGAGGCTGGACCAG
TACAAGTCAGCCAAGGAAGCAATTTATGATCCTTTCTTCACCAACTTGATGGAGGAGGTTAGTTAA
AA sequence
>Lus10001517 pacid=23157240 polypeptide=Lus10001517 locus=Lus10001517.g ID=Lus10001517.BGIv1.0 annot-version=v1.0
MAEEQCRGGGGGGDRHRLKQQQQEQAIYRRRRPAAQPQSHLEPPAPLNQSHLSNLNRPSLVPPPVRRVSWNRSLSIRGRVSIAVVASVEDGPQKMNKLKL
PRGNGKGKGKPPVHRLPPQNFEKEREYFKEVDDFELLEESPSPKHPSTWVASNPTDADPVQPLPPRLPNWLISHNFRSSSDLSTTLSKILGTPDMPSQPI
YTDGFDNFELKNPEKASFKPHSNMHSSVARIHSYLPHKAVTGIENGRFSGEGVPGVEFEDIDAAVRKLSLASTSSSLDLDFVDPFAALLAYCGQSAPSTL
LDVFSKYCHPDDIVKVGEGTYGEAFKVGNTVCKLVPIDGDLRVNGEVQKRSEELLEEVILSKTLNGLRSGASLQNACTTFIETLELKVCQGPYDPALIRA
WEEWDEQNNSENDHPRGFSAKQRYVVFILQHGGKDLESFVLLNFDEARSLLVQIVSAFAVAEAAYEFEHRDLHWGNILLSRNESANLQFTLEGKKRFLKT
FGMSVSVIDFTLSRINTGQDILFFDMSSDPDLFKGPKGDRQAETYRKMKEVTKDSWEGSHPRTNILWLLYLVDILLLKKSYERSSKHEREMRSLKKRLDQ
YKSAKEAIYDPFFTNLMEEVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G09450 AtHaspin Haspin-related gene, Protein ... Lus10001517
[exp]
0 1
AT5G26850 Uncharacterized protein (.1.2.... Lus10020697
[exp]
4.9 0.9388
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Lus10024822
[exp]
7.7 0.9392
AT1G04020 ROW1, ATBARD1, ... breast cancer associated RING ... Lus10022895
[exp]
7.7 0.9339
AT4G21070 ATBRCA1 ARABIDOPSIS THALIANA BREAST CA... Lus10036151
[exp]
8.0 0.9338
AT2G43990 unknown protein Lus10027108
[exp]
11.0 0.9120
AT2G46980 unknown protein Lus10038019
[exp]
12.2 0.9257
AT1G63640 P-loop nucleoside triphosphate... Lus10024628
[exp]
13.0 0.9101
AT4G39790 Protein of unknown function (D... Lus10041710
[exp]
13.5 0.9299
AT3G17030 Nucleic acid-binding proteins ... Lus10037764
[exp]
13.5 0.9233
AT1G67040 unknown protein Lus10033565
[exp]
14.1 0.9288

Lus10001517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.