Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24490 627 / 0 ATRGTA1 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) AT5G41820 489 / 3e-165 ATRGTA2 RAB geranylgeranyl transferase alpha subunit 2 (.1) AT3G59380 76 / 1e-14 FTA, PLP, ATFTA, PFT/PGGT-IALPHA PLURIPETALA, farnesyltransferase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031441 [exp] 1189 / 0 AT4G24490 667 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10022404 [exp] 1076 / 0 AT4G24490 656 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10015954 [exp] 86 / 1e-17 AT3G59380 414 / 1e-145 PLURIPETALA, farnesyltransferase A (.1) Lus10000763 [exp] 86 / 1e-17 AT3G59380 421 / 1e-147 PLURIPETALA, farnesyltransferase A (.1) Lus10042569 [exp] 47 / 4e-05 AT1G10095 387 / 2e-132 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225100 [exp] 810 / 0 AT4G24490 659 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Potri.007G127500 [exp] 89 / 6e-19 AT3G59380 433 / 2e-153 PLURIPETALA, farnesyltransferase A (.1) Potri.013G047100 [exp] 54 / 2e-07 AT1G10095 430 / 4e-149 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01239 [flax] [poplar] PPTA Protein prenyltransferase alpha subunit repeat CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10001518 pacid=23157244 polypeptide=Lus10001518 locus=Lus10001518.g ID=Lus10001518.BGIv1.0 annot-version=v1.0 ATGCACGGCCGCCCTCGTACTCCCTCGAAGCCCGTGGATGAAGCCGGATTACTAGCCAAGGCCAGCAAGCTCCGTGCCCTGCAATCCGATTTCATTTCCA ATCATCAGAACAAAATTTACACCAAGGAAGCTGTGGAGCTGAGTGCCAAACTTCTCGAGATAAATCCCGAGCTGTACACGGCTTGGAACTACAGGAAGCT TGCTGTCTACCACAATCTAGCTCTAGCCCACTCTGGTTCCAATCCCGACTCCGTTGACTCCATTCTCGATGCTGAGCTTAAAGTGGTGGAGAATGCGTTG AAGCAGAATTATAAATCGTATGGAGCTTGGCACCATAGGAAATGGGTGCTGTCCAAAGGGCATTCTTCTGTTGATAAGGAGCTGGAGCTTCTGGACAAGT TCCAATCTCAGGATGCACGCAATTTCCATGCCTGGAACTACCGCAGATTTGTTGCGGCATTGATGAAACGGTCAGACGAGGATGAAATAGAGCACACTCA GAATCTGATTGAGAAAAATCTCAGCAACTATTCTGCCTGGCATAATCGCAGTGTACTTCTTTCAAATTTGATGAACAAGAAAGCTGAAGGCTTTACAAAT AGAGAAGAGGTTCTAACCAGGGAGTATGAATTGGTGCGTGAAGCTCTTTTTACTGACGAAGATGATCAAAGTGGATGGTTCTATCATCTTTGGCTTCTTG ATCAAACTGTCAGATCCGAGTACCCCCTGCTTGTTTCTTCATCGCCTGTTCATGGCTCTGATATTGCCTTGCCAGCAGCTGGTTGCCTCAGTGATTGTGC CTCGTCAGTCAATCTGCTCAGTTTAAATTCGAAGAAATTTCCACTCATTCTTTACTTCAACCAGTCTGTCGAGGGTATAAACTCATCTACTGTAAGCGTC TCAACTAAGTTTACCGCAACTACTGATCTTATTTGGAAGCCGTGTTCTGTGAATGACTCTCAAAGTGCAAAAGTCTGGACTACGCATTTAGATGTCCCTG ATAGGGCTCCCGACTCTTCTGAAGCTTATCAGGTGGAGGTGAAGGTTGGGCACTCGCCGGGAATTGTTTCTTCTAATGGTGTACAGTACCGTCATCCTAG TCAGATTTCGTTTCAACTGCATGTGCAAAAGGCCAAACTTGAATCTGCAGAAGACTCAAGTTCTGGGAGAATGCAGTGGAAAGATGATTGTTTCTCTCTT TATGAATCTGGTTCTACAGCACCTGATCTGGTTGACCTACATGATAACCTAAGAATCAAGAATGGACCAGAGCTAACAGCTTCACCATGGCAAGAAAGAA TCTTAGATGAAGAGACTAGCATCTTCCGTGAGCTATTGGACTGTAAAATCGGGAAGCTGACTGTGGCTAGACTGTTGACTGCTTACGATTTATTGAGACC TTTTGATGAACCAGTCCATTCAAAGGAAGTTCTACAGCTATACAGTGAGCTAATGAAGTTGGATCCTCCTCATCGCCAATATTACAAAGATAACCACAGT TTGGTTCTTTTGCGACAGCTGGGATCATTTGAAAAGTTGCTATGGGTTCAAGTGCTAGACCTCAGCAACAATGAACTTCAATCAATTCAAGGAATGGAGG CAATGCAACTCCTCTCCCACCTGTGTTTGAGCAACAACAAGCTGAAAAGCTTCAGTGCTTTGGAGCCTCTAAGGCATCTAACGTCACTGAAAGTGTTGGA CGTTTCGAATAACGAGATAGGTTCACATTCCATCGACACAACCAGATATCAATTCTGTTCGCCGTTATCTCATTCAGCTGCTGGAAGTGATGGCGATAGC AATGATGTTGGTTGGAGGAGGGACTATTGGGAAGCCTATTTCATCCTGAAAGACATGGAGTTGACTCAAATGGATGTTGCAGGGAATGCAATTGCTAGTG AGAGTTTCAGCTTGTTTCTGGTGAAGGTGCTGCACGCACTGAAGTGGCTGGACGGTGTACAAGTAAAATGA
AA sequence Show only first row Show all	>Lus10001518 pacid=23157244 polypeptide=Lus10001518 locus=Lus10001518.g ID=Lus10001518.BGIv1.0 annot-version=v1.0 MHGRPRTPSKPVDEAGLLAKASKLRALQSDFISNHQNKIYTKEAVELSAKLLEINPELYTAWNYRKLAVYHNLALAHSGSNPDSVDSILDAELKVVENAL KQNYKSYGAWHHRKWVLSKGHSSVDKELELLDKFQSQDARNFHAWNYRRFVAALMKRSDEDEIEHTQNLIEKNLSNYSAWHNRSVLLSNLMNKKAEGFTN REEVLTREYELVREALFTDEDDQSGWFYHLWLLDQTVRSEYPLLVSSSPVHGSDIALPAAGCLSDCASSVNLLSLNSKKFPLILYFNQSVEGINSSTVSV STKFTATTDLIWKPCSVNDSQSAKVWTTHLDVPDRAPDSSEAYQVEVKVGHSPGIVSSNGVQYRHPSQISFQLHVQKAKLESAEDSSSGRMQWKDDCFSL YESGSTAPDLVDLHDNLRIKNGPELTASPWQERILDEETSIFRELLDCKIGKLTVARLLTAYDLLRPFDEPVHSKEVLQLYSELMKLDPPHRQYYKDNHS LVLLRQLGSFEKLLWVQVLDLSNNELQSIQGMEAMQLLSHLCLSNNKLKSFSALEPLRHLTSLKVLDVSNNEIGSHSIDTTRYQFCSPLSHSAAGSDGDS NDVGWRRDYWEAYFILKDMELTQMDVAGNAIASESFSLFLVKVLHALKWLDGVQVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	0	1
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	5.9	0.9388
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	6.2	0.9348
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	7.1	0.9292
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	11.0	0.9151
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	12.0	0.9091
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	12.0	0.9253
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	13.9	0.9291
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	14.5	0.8980
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10022356 [exp]	15.1	0.8521
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	15.2	0.9192

Compare expression of checked genes

Lus10001518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.