Plant FIBer expression Database

Lus10001520 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26749 130 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031439
[exp]
201 / 5e-67 AT5G26749 143 / 1e-44 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G004801
[exp]
145 / 3e-45 AT5G26749 110 / 2e-31 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF06220 zf-U1 U1 zinc finger
CL0537 CCCH_zf PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence
>Lus10001520 pacid=23157254 polypeptide=Lus10001520 locus=Lus10001520.g ID=Lus10001520.BGIv1.0 annot-version=v1.0
ATGCCGTTGGGGAAATATCACTGCGATTACTGCGACAAGGAGTTCCAGGACACTCCCGTCGCCCGTAAACGCCACCTCCTCAGCTCATCTCACCTCCGTG
CCAAATCCATCTGGTACAACTCCTTCCCTCCCTCCTCCGCCGCTTCCAACGCTCCTCCTCCTCCTCCGACGGGACTCTGTAATCGCTTCGTCAAAACAGG
ATTCTGCCCCTATGGAGACTCTTGTAAGTACTCGCACCTCAGTAGCAACACCGCTACCCCTCAGAATTACAATTCCGCTCAAGATCTGTCAGTTCCAGGC
CTTGTAGCAGCTGCCGGTAGTCTGTCTTCTAGCTTTCAGTCCGGACCGAGCTCTGTCCATGGTACTGTTCTTGCTTCAATTTCTGCAACCACAGTAATGC
CGAATAGCATGGGAGGGTGGTGGGGCAATCTGCCGCCGTCTCTAATGCCGCCACCTGAAGGCGGATATCGATCGGATCTTCCATATCTAGACTGGGGGTG
A
AA sequence
>Lus10001520 pacid=23157254 polypeptide=Lus10001520 locus=Lus10001520.g ID=Lus10001520.BGIv1.0 annot-version=v1.0
MPLGKYHCDYCDKEFQDTPVARKRHLLSSSHLRAKSIWYNSFPPSSAASNAPPPPPTGLCNRFVKTGFCPYGDSCKYSHLSSNTATPQNYNSAQDLSVPG
LVAAAGSLSSSFQSGPSSVHGTVLASISATTVMPNSMGGWWGNLPPSLMPPPEGGYRSDLPYLDWG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G26749 C2H2 and C2HC zinc fingers sup... Lus10001520
[exp]
0 1
AT1G28290 AGP31 arabinogalactan protein 31 (.1... Lus10015434
[exp]
2.8 0.9238
AT5G52860 ABCG8 ATP-binding cassette G8, ABC-2... Lus10039305
[exp]
7.4 0.8772
AT1G21880 LYM1 lysm domain GPI-anchored prote... Lus10018191
[exp]
7.7 0.8945
AT2G32840 proline-rich family protein (.... Lus10003918
[exp]
11.4 0.8773
AT2G36400 GRF ATGRF3 growth-regulating factor 3 (.1... Lus10023877
[exp]
11.5 0.8909
AT4G21610 LOL2 lsd one like 2 (.1) Lus10007343
[exp]
13.0 0.8620
AT5G52860 ABCG8 ATP-binding cassette G8, ABC-2... Lus10039304
[exp]
13.7 0.8836
AT4G10630 Glutaredoxin family protein (.... Lus10008270
[exp]
14.8 0.8867
AT1G19990 unknown protein Lus10033141
[exp]
17.0 0.8852
AT5G49665 Zinc finger (C3HC4-type RING f... Lus10028225
[exp]
17.9 0.8753

Lus10001520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.