Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56700 297 / 2e-101 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) AT1G23440 258 / 2e-86 Peptidase C15, pyroglutamyl peptidase I-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031438 [exp] 327 / 3e-109 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029137 [exp] 252 / 5e-84 AT1G23440 311 / 8e-109 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) Lus10013026 [exp] 248 / 4e-82 AT1G23440 309 / 6e-108 Peptidase C15, pyroglutamyl peptidase I-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G005100 [exp] 328 / 4e-114 AT1G56700 344 / 1e-121 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Potri.005G005800 [exp] 327 / 2e-113 AT1G56700 335 / 5e-118 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0379 [flax] [poplar] PgaPase PF01470 [flax] [poplar] Peptidase_C15 Pyroglutamyl peptidase
Representative CDS sequence Show only first row Show all	>Lus10001521 pacid=23157257 polypeptide=Lus10001521 locus=Lus10001521.g ID=Lus10001521.BGIv1.0 annot-version=v1.0 ATGGACCTTCTTCTTTCTCTTCTCAGCAGCAGTCAGTTGCCTCAGACTGGTTGCGGAGCCATGACGACGGCGAGCATCTCGAAGCCTCTGATGATTGCAA AGAACTTTGAGCAAATAAAGCTGAGCTATAGTTCTCAGCTACCATCTCACTTCTCCAGCTTCTGTGGTTGCAACCCCGACTGGCCAACGATGGTGTGTTT GATGGGATCAGAAGGGACGATACCTGGGACTGAAATCTCAGAAAAGGAAGCGCCTTGCATAACAGTCCATGTCACAGGGTTTAAGAGATTCCATGGAGTT TCCGAGAATCCAACGGAGACCATCGTTGGAAACCTTGAGGAGTACATGGGGAAGAATGGCGGGATGCCTAGAGGTTTAATCTTGGGAAGTTGTCATGTTC TTGAGACTGCTGGACAAGGAGCAGTAGCTCCTCTTTACCAGACATTGCAGTCTGCCATTCCTCCCAAAAAGGGCTCTAATAATTCCGGCAGAGTCATTTG GGTTAGTTCGTTCGTTCAAGTTCGTTCTGTGTTGGGATGTGTTACAGTCATGGTGCATTTTGGGGTGAATAGTGGGGCAACCAAGTTTGCAGTAGAGAAT CAAGCTGTGAATGAAGCTACTTTCAGATGCCCTGATGAGATGGGATGGAAGCCACAGAAGCTACCTATTGTTCCTTCAGATGGTGAAATCTCGCAAGTTC GAGAGACGGCTCTTCCTGTTAGCGAGATCACCAAGGCGCTGGCGAACAAAGGTTATGAAGTGACGGTATCTGACGATGCTGGACGGTTCGTGTGTAACTA TGTATACTACCATTCGCTTCGATTTGCACAGCAGAACGGGATTGAGTCGCTGTTCGTGCATGTGCCTCTGTTCTTGACCATTGATGAGGAGACCCAAATG CGGTTTGCTGCTTCCTTGTTGGAGGTACTTGCTTCTTCATTGTAA
AA sequence Show only first row Show all	>Lus10001521 pacid=23157257 polypeptide=Lus10001521 locus=Lus10001521.g ID=Lus10001521.BGIv1.0 annot-version=v1.0 MDLLLSLLSSSQLPQTGCGAMTTASISKPLMIAKNFEQIKLSYSSQLPSHFSSFCGCNPDWPTMVCLMGSEGTIPGTEISEKEAPCITVHVTGFKRFHGV SENPTETIVGNLEEYMGKNGGMPRGLILGSCHVLETAGQGAVAPLYQTLQSAIPPKKGSNNSGRVIWVSSFVQVRSVLGCVTVMVHFGVNSGATKFAVEN QAVNEATFRCPDEMGWKPQKLPIVPSDGEISQVRETALPVSEITKALANKGYEVTVSDDAGRFVCNYVYYHSLRFAQQNGIESLFVHVPLFLTIDEETQM RFAASLLEVLASSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	0	1
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	2.2	0.9596
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	2.4	0.9580
AT4G17960			unknown protein		Lus10000314 [exp]	4.2	0.9537
					Lus10006539 [exp]	4.6	0.9398
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	4.9	0.9486
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	6.2	0.9299
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	6.3	0.9298
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	6.9	0.9345
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	6.9	0.9265
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	7.4	0.9363

Compare expression of checked genes

Lus10001521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.