Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09390 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 441 / 5e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 337 / 4e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 291 / 4e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 260 / 4e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 247 / 4e-79 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT3G26430 245 / 4e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 243 / 2e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 241 / 2e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 216 / 6e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031438 [exp] 603 / 0 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 284 / 2e-93 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029638 [exp] 282 / 4e-92 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029639 [exp] 276 / 3e-90 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10008784 [exp] 253 / 6e-81 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 241 / 3e-76 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 231 / 1e-72 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 224 / 2e-66 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 202 / 2e-61 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006500 [exp] 486 / 5e-173 AT1G09390 506 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G191100 [exp] 362 / 4e-124 AT1G09390 400 / 5e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 278 / 7e-91 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 275 / 5e-90 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.002G216000 [exp] 274 / 3e-89 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.010G047900 [exp] 268 / 8e-87 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 261 / 3e-84 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 248 / 3e-79 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 247 / 1e-78 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 244 / 1e-77 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10001522 pacid=23157256 polypeptide=Lus10001522 locus=Lus10001522.g ID=Lus10001522.BGIv1.0 annot-version=v1.0 ATGGCGGCAAGATCTCCACCATTCCTTGCCATCTTCCTCCTCTTCCAGCTACTCTGCATCTCCTTAGCTACTTCTGTACAAGCTGCTCCTCATTGCAGCA GGCAGCCGGTGATCTTCAACTTCGGAGATTCAAACTCAGATACCGGAGCTCTCCTCGCCGGCCTCGGATTCCCCATCAACCCACCTAACGGCCGTGCTTT CTTCGGCGGTTCTTCTACTGGCCGCCTCTCCGACGGTCGCCTCGTCCTCGACTTCCTCTGCCAGAGCCTGAACACAACATTCCTGACGCCATACATGGAC TCCCTATCAGGCTCCAAGTTCACCAACGGCGCAAACTTCGCAGTCGTCGGATCATCAACCCTCCCAAAATTCGTTCCGTTCTCCCTCCACATCCAGCTAA TGCAGTTCCTCCACTTCAAATCCCGATCCCTCCAGCTCCCAACCCTCAGCTTCACCCCACAACGCTTCCAAACCGCCCTCTACACGATCGACATTGGGCA GAACGACATCGCAGACTCCTTCTCGAAGAACATGACTTACGCTGAAGTGGTGAAACGAATCCCTTTGGTTCTTTCCGAGATACACGATGCTGTGAAGACG TTATATGGAGATGGTGGTGGGAGGAAGTTCTGGATACATAATACAGGGCCGTTGGGATGCTTGCCGCAGAAGCTGGCCATGGTTAAGGGTGAGGGTTTGG ATGGTGCTGGGTGTATAACTAGTTATAATGAAGCTGCGAAGCTTTTCAATGAAGGGCTGAGGAGGTTGTGTGGGAGGTTGCGGTCGGAGTTGAAGGATGC GACGGTTGTTTATGTTGATGTTTACTCTGCCAAGTATGATCTCATTGCCAATGCCTCTAAGTACGCCGAGCTAATGTTCAGGGTTGCAGGGTTTGGAAGT AGTCCGCTGAGGGCGTGCTGTGGGTTCGGAGGAGCGCCATACAACTACGACATAAAGGTTCCGTGCGGACAGCCAGGGAGCGAAGCTTGCAGCGTAGGGA GCAGATCGGTGAGCTGGGATGGGATTCATTACACTGATGCTGCAAACTCTTTCGTGGCTTCCAAGCTTCTCTCCAACGCTTACTCGTTTCCTCCGCTTAG CTTCAACTTCTTCTGCCGTTAG
AA sequence Show only first row Show all	>Lus10001522 pacid=23157256 polypeptide=Lus10001522 locus=Lus10001522.g ID=Lus10001522.BGIv1.0 annot-version=v1.0 MAARSPPFLAIFLLFQLLCISLATSVQAAPHCSRQPVIFNFGDSNSDTGALLAGLGFPINPPNGRAFFGGSSTGRLSDGRLVLDFLCQSLNTTFLTPYMD SLSGSKFTNGANFAVVGSSTLPKFVPFSLHIQLMQFLHFKSRSLQLPTLSFTPQRFQTALYTIDIGQNDIADSFSKNMTYAEVVKRIPLVLSEIHDAVKT LYGDGGGRKFWIHNTGPLGCLPQKLAMVKGEGLDGAGCITSYNEAAKLFNEGLRRLCGRLRSELKDATVVYVDVYSAKYDLIANASKYAELMFRVAGFGS SPLRACCGFGGAPYNYDIKVPCGQPGSEACSVGSRSVSWDGIHYTDAANSFVASKLLSNAYSFPPLSFNFFCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	0	1
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	1.4	0.9095
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	2.4	0.8743
					Lus10036558 [exp]	3.5	0.8426
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	3.7	0.8848
AT3G21400			unknown protein		Lus10006520 [exp]	4.5	0.8579
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	5.1	0.8376
AT3G52610			unknown protein		Lus10022699 [exp]	5.7	0.8148
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10009873 [exp]	6.3	0.8476
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	6.3	0.8557
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	6.5	0.8553

Compare expression of checked genes

Lus10001522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.