Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09380 415 / 1e-144 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 234 / 9e-74 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 233 / 2e-73 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 220 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 218 / 1e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 216 / 4e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 217 / 5e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G68170 215 / 1e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 212 / 3e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G30340 209 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031437 [exp] 666 / 0 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 254 / 3e-81 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 246 / 6e-78 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 233 / 6e-73 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 232 / 8e-73 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 231 / 2e-72 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 233 / 1e-71 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 223 / 2e-69 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10007862 [exp] 218 / 2e-67 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006600 [exp] 454 / 2e-160 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 243 / 9e-77 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 240 / 1e-75 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 238 / 6e-75 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 236 / 4e-74 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 234 / 6e-74 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.001G108600 [exp] 223 / 1e-69 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 217 / 3e-67 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G029100 [exp] 214 / 5e-66 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G209200 [exp] 213 / 1e-65 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10001523 pacid=23157239 polypeptide=Lus10001523 locus=Lus10001523.g ID=Lus10001523.BGIv1.0 annot-version=v1.0 ATGGAGATGGGGAAGATGGAGGGTATGTTGCCGATGGTCGCAATGGTGCTGGTTCAAATCGGATACGCGGGGATGAACGTCATGGCTAAGATGGCTATGA ACTCCGGGATGAAGCCTCTTGTTCTCGTTGCATACCGCCAGCTCTTCGCCACTCTTTCTCTCGCTCCCTTTGCCTTCTTCCTTGAGAGGAAGACTATACC GGAGATCAATGGCCGTCTGTTATGGAACATTTTCCTGTGCTCTCTCACCGGAGTGACGGGGAACCAGGTTCTATACTTCATCGGATTGCAACTATCAACC CCGACCATCGGTTGCGCCTTGACCAACGTCTTGCCCGCTCTAACCTTCGTCCTCGCCGTCATTTTCAGACAAGAATCAGTGGGAATCAAGAGAATCTCAG GGCAAGCCAAAGTCGCAGGAACAGCAGCCTGCGTAGGTGGCGCAATGCTGCTGTCGTTTTACCACGGACACGTCATCAAGATCCCGGAATCCAGCATCCA CCTCAACCACGGCCAAGAAGCTAGCAGTACAGCTGGCAGTACAAGTGGTTCCAATGTGTTCTTGGGACCGTTGTTGATCATGGGTAGCGCCGTGTCGTGG GCTCTATGGTTCGTTTTGCAGGCTAGGGTCAGCGTGAGTTTCCCTGCGCCTTACACCAGCACTTGGCTCATGTGCTTCATGGGCAGCCTTCAGTGTCTCG CCATCGCGTTGGGTCCGAACCACGAGCTCGAGCAGTGGTCCTTGCGCTCCCCTGACCGCCTCGTCGCTGCCCTTTACGCGGGGATAGTGTGCTCTGCGCT AGCGTTTTCGCTGACGGCGTGGAGCATACAGAGGAAAGGGGCTCTCTACGTTTCGGTGTTCAACCCTCTCTTGCTCGTGGTGGTGGCGGTTCTCAGCTGG GCCGTCCTCGGCGAGAAACTCTTCCTCGGAACGTTGGTGGGTGCAGTTTTGATCATTGGGGGGCTGTACTTGGTGCTGTGGGGAAAGGACAAAGAAGGGA AGATGGGGGATCATCAAGAAGTTCTGGATCATCGTCAGTTGATGGTTTTCGTGGCGGCGGTTGATCGGGACGACGTGGAGTCTCAGTTGCCGGCGGCTGG CGGAGGGGATCGTGATCAAGCTAATGGGAAAACCATGGAATAA
AA sequence Show only first row Show all	>Lus10001523 pacid=23157239 polypeptide=Lus10001523 locus=Lus10001523.g ID=Lus10001523.BGIv1.0 annot-version=v1.0 MEMGKMEGMLPMVAMVLVQIGYAGMNVMAKMAMNSGMKPLVLVAYRQLFATLSLAPFAFFLERKTIPEINGRLLWNIFLCSLTGVTGNQVLYFIGLQLST PTIGCALTNVLPALTFVLAVIFRQESVGIKRISGQAKVAGTAACVGGAMLLSFYHGHVIKIPESSIHLNHGQEASSTAGSTSGSNVFLGPLLIMGSAVSW ALWFVLQARVSVSFPAPYTSTWLMCFMGSLQCLAIALGPNHELEQWSLRSPDRLVAALYAGIVCSALAFSLTAWSIQRKGALYVSVFNPLLLVVVAVLSW AVLGEKLFLGTLVGAVLIIGGLYLVLWGKDKEGKMGDHQEVLDHRQLMVFVAAVDRDDVESQLPAAGGGDRDQANGKTME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	0	1
AT2G43870			Pectin lyase-like superfamily ...		Lus10011419 [exp]	2.0	0.8563
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	3.9	0.8170
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	5.8	0.8248
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10038933 [exp]	8.9	0.7637
AT2G19380			RNA recognition motif (RRM)-co...		Lus10020460 [exp]	12.2	0.7149
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	13.1	0.7252
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10041605 [exp]	15.3	0.7474
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10025983 [exp]	15.9	0.7077
AT4G02210			unknown protein		Lus10023062 [exp]	16.5	0.7123
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	17.0	0.7796

Compare expression of checked genes

Lus10001523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.