Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09340 639 / 0 CSP41B, CRB, HIP1.3 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) AT3G63140 196 / 6e-59 CSP41A chloroplast stem-loop binding protein of 41 kDa (.1) AT1G75280 49 / 3e-06 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 47 / 1e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G12780 45 / 4e-05 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 45 / 6e-05 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT3G14790 45 / 8e-05 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 44 / 0.0001 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031435 [exp] 772 / 0 AT1G09340 644 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Lus10014669 [exp] 219 / 8e-68 AT3G63140 592 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10006931 [exp] 218 / 3e-67 AT3G63140 582 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10007355 [exp] 44 / 0.0001 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10037102 [exp] 41 / 0.0009 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010266 [exp] 644 / 0 AT1G09340 652 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Potri.013G006100 [exp] 637 / 0 AT1G09340 647 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Potri.005G209500 [exp] 199 / 7e-60 AT3G63140 597 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.002G053000 [exp] 198 / 1e-59 AT3G63140 594 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.018G101700 [exp] 48 / 5e-06 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10001525 pacid=23157246 polypeptide=Lus10001525 locus=Lus10001525.g ID=Lus10001525.BGIv1.0 annot-version=v1.0 ATGGCGGCGAGAATGGCTGTACTGCAGCAGCAAGTAACTCATCAGCTGCCTCTCACTTCTTCTCTATACGATTTCAATGGCGGGACTCGCTTCCGCAACT CCAACCTGCAGTTCAGAAGAAGGGCGGCTGGTCAGCAGCAATCTTTCCAAGTCAGAGCAGCTGTGTCCAAGAACATTCTCATCATGGGTGGCACTCGATT CATCGGTGTCTTCTTGTCCAGGCTCCTTGTTCAAGAGGGTCATCAGGTGACTTTGTTTACTAGAGGGAAGGCACCAATTACCCAGCAGCTGCCTGGGGAA TCTGACCAGGATTTTGCTGACTTCTCTTCTAAGATATTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTTAAGACCAGCCTTGCAGCTAAAGGCT TTGATGTTGTCTATGACATCAATGGCCGTGAGGCGACTGAGGTTGAACCCATTATAGAAGCTCTACCAAACTTAGAACAGTTTATTTATTGCTCTTCAGC TGGTGTGTACCTGAAATCTGATCTCTTACCACATTGCGAGGAAGATGCGGTTGACCCGAAAAGCCGGCACAAGGGGAAGCTCGAAACCGAGAGCATACTG GAAACCAAAGGTGTGAACTGGACTTCCATAAGGCCAGTCTACATCTACGGACCTCTGAACTACAACCCTGTGGAGGAATGGTTCTTCCACCGGTTGAAAG CCGGTCGACCTATCCCGATACCCAACTCGGGTGTCCAGATAACCCAGCTGGGGCATGTCAAGGATTTGGCTACGGCGTTCGTTCAAGTCCTTGGGAATCC AAAGGCCAGCAGGGAAGTGTTCAATATAGCCGGTGACAAGTATGTCACTTTCGACGGTTTGGCCAGAGCATGCGCTAAGGCTGGTGGGTTTCCTGAACCG GAGCTGGTTCACTACAACCCGAAGGAGTTCGATTTTGGGAAGAAGAAGGCATTCCCATTCCGTGACCAGCATTTCTTTGCGTCGGTGGACAAGGCGAAGC GGGTGCTGGGATGGAAGCCGGAGTTCGACCTTGTGGAGGGTCTCACTGACTCGTACAGCCTTGATTTCGGGAGGGGCACCTTCAGGAAAGAGGCTGATTT CTCCACCGACGACATGATCCTCGGCAAATCTCTGGTCACTGCCTAG
AA sequence Show only first row Show all	>Lus10001525 pacid=23157246 polypeptide=Lus10001525 locus=Lus10001525.g ID=Lus10001525.BGIv1.0 annot-version=v1.0 MAARMAVLQQQVTHQLPLTSSLYDFNGGTRFRNSNLQFRRRAAGQQQSFQVRAAVSKNILIMGGTRFIGVFLSRLLVQEGHQVTLFTRGKAPITQQLPGE SDQDFADFSSKILHLKGDRKDFDFVKTSLAAKGFDVVYDINGREATEVEPIIEALPNLEQFIYCSSAGVYLKSDLLPHCEEDAVDPKSRHKGKLETESIL ETKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGVQITQLGHVKDLATAFVQVLGNPKASREVFNIAGDKYVTFDGLARACAKAGGFPEP ELVHYNPKEFDFGKKKAFPFRDQHFFASVDKAKRVLGWKPEFDLVEGLTDSYSLDFGRGTFRKEADFSTDDMILGKSLVTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10001525 [exp]	0	1
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	1.0	0.9815
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10010412 [exp]	2.0	0.9738
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	2.4	0.9707
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10035545 [exp]	2.8	0.9685
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	3.5	0.9659
AT1G74730			Protein of unknown function (D...		Lus10004269 [exp]	4.0	0.9602
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10023149 [exp]	4.2	0.9568
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	5.3	0.9609
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	7.1	0.9682
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	7.7	0.9528

Compare expression of checked genes

Lus10001525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.