Plant FIBer expression Database

Lus10001526 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32928 50 / 1e-09 unknown protein
AT1G32920 50 / 2e-09 unknown protein
AT5G54165 44 / 3e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033221
[exp]
148 / 4e-48 AT1G32928 49 / 5e-09 unknown protein
Lus10023231
[exp]
102 / 9e-30 AT5G54165 45 / 1e-07 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G021602
[exp]
53 / 1e-10 AT5G54165 49 / 4e-09 unknown protein
Potri.015G004800
[exp]
53 / 2e-10 AT5G54165 47 / 2e-08 unknown protein
Potri.001G449900
[exp]
50 / 1e-09 AT1G32928 64 / 7e-15 unknown protein
Potri.001G449800
[exp]
50 / 1e-09 AT1G32928 64 / 7e-15 unknown protein
Potri.001G450000
[exp]
50 / 2e-09 AT1G32928 64 / 6e-15 unknown protein
Potri.011G151600
[exp]
47 / 4e-08 AT1G32928 57 / 2e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10001526 pacid=23146009 polypeptide=Lus10001526 locus=Lus10001526.g ID=Lus10001526.BGIv1.0 annot-version=v1.0
ATGATGATGATGTCGATGTTCAGCCCGTTTGATATTCTGTCGGGAGAAATTTTCGGGCAGAAGACCAATAACATGCCTTCCAGCGTTTCCAACGGCAATA
AGAAATCGCAGCCGGAGGCGGTAAAATTAGACGACGGCAGGTCGCCTGCGCCGGAGAAGAAGAAGCCGGATCAAGGTGTTGGATATGAAGAGAGGGGGAA
GCGGCGGATGGTGCCGAGGTTTGCGGTGGAGTTTGATGGGATTCACTGTTTCGAGACGGTTGTGTCTTCTTGTTAA
AA sequence
>Lus10001526 pacid=23146009 polypeptide=Lus10001526 locus=Lus10001526.g ID=Lus10001526.BGIv1.0 annot-version=v1.0
MMMMSMFSPFDILSGEIFGQKTNNMPSSVSNGNKKSQPEAVKLDDGRSPAPEKKKPDQGVGYEERGKRRMVPRFAVEFDGIHCFETVVSSC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32920 unknown protein Lus10001526
[exp]
0 1
AT5G59730 ATEXO70H7 exocyst subunit exo70 family p... Lus10005436
[exp]
1.0 0.9304
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Lus10040924
[exp]
1.4 0.9056
AT1G32928 unknown protein Lus10033221
[exp]
2.4 0.8950
AT4G25470 AP2_ERF DREB1C, FTQ4, C... FREEZING TOLERANCE QTL 4, DRE/... Lus10035566
[exp]
3.5 0.8533
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Lus10010943
[exp]
4.5 0.8680
AT1G10010 AAP8, ATAAP8 amino acid permease 8 (.1) Lus10035663
[exp]
6.5 0.8403
AT5G45890 SAG12 senescence-associated gene 12 ... Lus10002301
[exp]
6.6 0.8053
AT2G27520 F-box and associated interacti... Lus10004586
[exp]
7.4 0.7554
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Lus10040923
[exp]
7.5 0.8385
AT3G12580 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN... Lus10023419
[exp]
8.9 0.8226

Lus10001526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.