Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64625 202 / 4e-57 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT2G27230 202 / 7e-56 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G06150 181 / 3e-48 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31280 179 / 2e-47 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT5G24352 64 / 8e-13 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 64 / 1e-10 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT5G53900 60 / 2e-09 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 50 / 3e-06 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT1G27740 46 / 5e-05 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT2G46510 46 / 7e-05 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033222 [exp] 1296 / 0 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10013348 [exp] 223 / 2e-62 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10000609 [exp] 186 / 7e-50 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033880 [exp] 168 / 2e-43 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10010877 [exp] 126 / 8e-30 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003569 [exp] 58 / 6e-10 AT2G31280 120 / 1e-32 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10041936 [exp] 60 / 4e-09 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10012986 [exp] 52 / 9e-07 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10024800 [exp] 49 / 6e-06 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144900 [exp] 531 / 5e-179 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 490 / 4e-163 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 226 / 1e-62 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 224 / 3e-62 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.005G222500 [exp] 193 / 2e-52 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 184 / 2e-49 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.006G090000 [exp] 180 / 7e-48 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G397800 [exp] 70 / 3e-12 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.011G116400 [exp] 65 / 8e-11 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.014G024000 [exp] 54 / 2e-07 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001527 pacid=23146000 polypeptide=Lus10001527 locus=Lus10001527.g ID=Lus10001527.BGIv1.0 annot-version=v1.0 ATGGGTAGTGGAAAGATGGAATCTTTAGTCAAGGAGAAGCTCAGGAGCCTCTGTTGCAGCAATGGCTGGTCTTTTGGAGTCCTCTGGCGCCTTGATCAGC GGAATTCCATGTTGCTGAGAGTTGAAGATGCCTATGTTGAAGAACAAATGCAGACAGTAGTTACAGATTTGCTTCTTCAGGTCCACATTCTTGGTGAAGG AATAATTGGTCAGACAGCTGTTAGTGGGAAGCACCAATGGATTTCTGCTGCCTCTGTTGAATGCCAAGACTTACTGCAGGCTGATTCTGAGATTAGCAGC TTGATTTCTTCTGCTATGAAGACCATTTGTATCATTCCATTGGAATCACAAGGGGTCATACAGCTTGGATCTATTCAGAAGATTCCGGAGAGGCTAGAGT TTGTGGAACAAGCAAAAAGGTTGTTCAGTGACATGGAAAGCGCTTGCAGTTTCGATCTGATGACAAGCAAGGCTTCATCATTGGCCTGCGATGCTTCTGA TCTAAATGACTGGTTTGCTTCCTTTTGTAATGGAAGCATTTCTCCCATCCGTGGTGAAAACTGCGATCAGCTAGTCGAATTCGGCTGTACTTCATCAAAC TCAGCATTACGTATAGAAGAAGCAAAGATTGTTCCTTCATTTGTAGACTCGAGCCGGGCATCTAGTCAATGGAGCAATGGAGGTTCCATTTTGACCTCAT TGGAGTCACATTTGGGTTCAGAAATGGAGGTCTGTGATCTTCCATGGAGTTACAATACAGGAGGGTTGGTTGAATTAGCTCAATCAATTCAAGAACATGT TGGAATAAGATCTGGTGCCACTCAGGATGATTCTTTGCAACAATCAGCCAGTAGCAGTGTCACTGAGCTTAAGGAAACAGAAACCTTATGTGGCTTTTCT GCAGACATGTCCAACTTTTTCAAGGTTGATAATCCATTTGAGTTGATGTCAACAAATTCAGGACTTCATGGACCCCGTTCAGGTCTGCTTCAAGATGTTC TACTCGACATTCCATTCAACCAACCGGCGAATATTTCGCAAAGCTGTATCAGTAATGATGTAGCTCAAAACGATCTGTTTGAAGTCCTAGGACTCAGGTC TTCTGCAAATGAGATTACAAAGATTGGCCCTCAAAAGGGGTTATTCTCTGAACTTGGACTTGAGGAGCTTCTAGGTGGCATTAGAAGTTCAAGGTGTGAT GCTAGATCAAGCATTATTGATGATGGGGCAGCATCACCTGCTAAGAGAATAAAAATGGAGAACTCATCCTACGGTGTTAACCAAGTTCATCACTTGGGGA ATGTCTCTTGTTCATCTAGCAGCACAAGCATGCCTGCTTCTAGTTTGGAGTACAAGGAGAAGAATCTCATGTTCTCAAAGTCGCCAATGGCAATGTTGAT TGACGACAGATACCACCGTAGCATCACATCCAAAGGAACTACTACCCCAGGAAAGGCTAAGAAGCCTGAGGAGTCTGTTAAAGGGTCCAAGAAAAGGGCT CGCCCCGGTGAAAGTTCTCGGCCAAGGCCAAAAGATCGTCAGCAGATCCAAGACCGTCTAAAGGAGTTGAAAGGAATAGTCCCCAATGCTGAAAAGGACA GCATTGATAATTTGTTGGCTAGAACAATCCAACACATGCGTTTCTTGCAGAGTGTGACAAAATATGCAGACCAGCTTAAACAAGCTGATCAGCCAATGAT AAGTGGCCAAGGGAATGGAAATGGTGGTGCTACTTGGGCATTGGAAGTGGGAGAGGAAACAGTGGTTTGTCCTGTTATGGTTAAAGACCTAGTTCCACCT GGTCTAATGCTTATTGAGATTCTGTGCAAGGATCAAGGATACTTTCTTGAGATAGCTGGTGCAGTAAGGGGTCTTGGGTTGAATGTGCTTAAAGGAGTGA TGAAAGCTCAAGATGATAAGGTGTGGGCTCGATTCGTTGTCGAGGCGAATTCATCCATGACAAGGACAGATGTACTTTGGTCCCTTGTCCCACTTTTACC CCAAGCAGCAGCCAATAGTGGGGTGGACCAGAACTTGTCAAGTAATGTTCATCATGTCTCCAGAAATTACCAGCAACCAGGACCAGCATGTCATATTGGC TTGGCTGAAGCTACTCAATGA
AA sequence Show only first row Show all	>Lus10001527 pacid=23146000 polypeptide=Lus10001527 locus=Lus10001527.g ID=Lus10001527.BGIv1.0 annot-version=v1.0 MGSGKMESLVKEKLRSLCCSNGWSFGVLWRLDQRNSMLLRVEDAYVEEQMQTVVTDLLLQVHILGEGIIGQTAVSGKHQWISAASVECQDLLQADSEISS LISSAMKTICIIPLESQGVIQLGSIQKIPERLEFVEQAKRLFSDMESACSFDLMTSKASSLACDASDLNDWFASFCNGSISPIRGENCDQLVEFGCTSSN SALRIEEAKIVPSFVDSSRASSQWSNGGSILTSLESHLGSEMEVCDLPWSYNTGGLVELAQSIQEHVGIRSGATQDDSLQQSASSSVTELKETETLCGFS ADMSNFFKVDNPFELMSTNSGLHGPRSGLLQDVLLDIPFNQPANISQSCISNDVAQNDLFEVLGLRSSANEITKIGPQKGLFSELGLEELLGGIRSSRCD ARSSIIDDGAASPAKRIKMENSSYGVNQVHHLGNVSCSSSSTSMPASSLEYKEKNLMFSKSPMAMLIDDRYHRSITSKGTTTPGKAKKPEESVKGSKKRA RPGESSRPRPKDRQQIQDRLKELKGIVPNAEKDSIDNLLARTIQHMRFLQSVTKYADQLKQADQPMISGQGNGNGGATWALEVGEETVVCPVMVKDLVPP GLMLIEILCKDQGYFLEIAGAVRGLGLNVLKGVMKAQDDKVWARFVVEANSSMTRTDVLWSLVPLLPQAAANSGVDQNLSSNVHHVSRNYQQPGPACHIG LAEATQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64625	bHLH	bHLH157	Serine/threonine-protein kinas...		Lus10001527 [exp]	0	1
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	11.2	0.7839
AT1G76140			Prolyl oligopeptidase family p...		Lus10034556 [exp]	17.3	0.7331
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	17.5	0.7555
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038767 [exp]	29.9	0.7428
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	33.7	0.7469
AT1G64625	bHLH	bHLH157	Serine/threonine-protein kinas...		Lus10033222 [exp]	34.7	0.6778
AT2G34150		ATSCAR1, WAVE1,...	WISKOTT-ALDRICH SYNDROME PROTE...		Lus10013904 [exp]	55.0	0.7113
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	60.3	0.7318
AT5G07620			Protein kinase superfamily pro...		Lus10032493 [exp]	63.5	0.7264
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10000620 [exp]	67.5	0.6552

Compare expression of checked genes

Lus10001527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.