Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00910 461 / 6e-159 Aluminium activated malate transporter family protein (.1) AT1G08440 310 / 3e-100 Aluminium activated malate transporter family protein (.1) AT3G11680 309 / 5e-100 Aluminium activated malate transporter family protein (.1) AT2G27240 304 / 1e-97 Aluminium activated malate transporter family protein (.1) AT1G08430 287 / 2e-91 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT5G46600 259 / 6e-80 Aluminium activated malate transporter family protein (.1) AT4G17970 253 / 1e-77 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 253 / 2e-77 Aluminium activated malate transporter family protein (.1.2.3) AT1G18420 211 / 1e-61 Aluminium activated malate transporter family protein (.1) AT3G18440 211 / 2e-61 ATALMT9 aluminum-activated malate transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033223 [exp] 827 / 0 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 334 / 1e-109 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 331 / 2e-108 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 285 / 6e-91 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 277 / 8e-88 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 249 / 3e-76 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 243 / 4e-74 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 233 / 5e-70 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10027657 [exp] 188 / 8e-53 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G085900 [exp] 547 / 0 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 537 / 0 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 447 / 1e-153 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 334 / 1e-109 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 331 / 2e-108 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.014G101200 [exp] 328 / 6e-108 AT4G00910 374 / 9e-126 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 322 / 2e-105 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 321 / 1e-104 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 319 / 8e-104 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 312 / 4e-101 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10001528 pacid=23146002 polypeptide=Lus10001528 locus=Lus10001528.g ID=Lus10001528.BGIv1.0 annot-version=v1.0 ATGGAACTAAGGCCCCATTGGCAAAACAACCAAACCATTTTCTGCCAAGGGCTAAAAACCTCACAGGCTTCTGGTAAACAGTTACTTGATAAGGAAGAAA TAGTGCAAATGGAGTGGAGGATAAATGTGGGAGATGGGTCATCAAAGGCATTGGTCCCGGAGACGAGTTTCGCCAGGAAAGTGGTGGGAGGACTAAAGGA GTTGATAGTAGCAGGAATCTTTCTCAGAATATGGAGGTTTTTGGTGAAAGCATGGAACTTGGGAGTGGATGATCCAAGGAAAGTGGTCCACTGCATAAAG CTTGGAGTGGCTCTAACTGTTGTATCAGTTTTTTACTACATGAGACCTCTCAATGATGGTGTTGGTGGCAATGCCATGTGGGCTGTTATGACTGTGGTGG TTGTCTTTGAGAACACTGTGGGTGCAACAATCTCCAAGTGTCTCAACAGAGTGTTTGCTACTTCAACTGCTGGATTCCTAGCATTGGGTGTCCATTGGGT AGCTAGTCAATCAGGACAAAGATTTGAACCCATCATTACTGGCCTTGCAGTCTTCATCTTAGCCTTTTCGGTGACTTTCTCGAGATTCATCCCCACTATA AAAGCGCGGTTCGACTACGGGTGCCTGATCTTCATCCTCACCTTCAGCTTTGTGAGCGTGTCTGGCTACCGGGTCGAACAACTATTCGACCTGGTTCACC AGAGGATGGCCACCATCATCGTTGGTACTTCGTTGGTGATCATTGTAACGATGTTCATATGCCCCATTTGGGCTGGTCAGGAGCTCCATTCTCTCCTCCT GCGTAACATGGACAAGCTTGCCAGTTCCTTGGATGGATCTATGTACTTGTATTTTGGTGAGAGTGAGGAAGAGAGTGATCCTGACAAACAACTTGCAAAC AAGTCGCTTGGTTACAGATGTGTTCTGTCGTCCAAGGCTGCTGAAGAGGCTTTTGCAAATTTTGCGAGGTGGGAGCCAGGCCATGGAATGTTCAGCTACA GGCATCCATGGAAGCAGTACCTGAAGGTGGGAGCGGCATTACGAAGCTGTGCATATTGCATCGAGGCACTCAACGGCTGCATCAATTCGACCAACAATCA GTCTCCCGATTCGATAAAGAATCACCTGAAGGAGAGCTGCCTGAAGGTTAGCTCGGCATCTTCCAAGATCACGAGAGAGGTAGCCAAATCCATGGAGACA ATGACGAAATCCCCCGCCGCCATGGAACTGCTCACAGAGGAGATTGGGGCTTCGGTTCAGGAAGTACAGGAGTCGCTGAAATCGCTTCCGGAGAAAAAAA CGGTTCCTCTGATGGACGTGATCCAGGCCGCGACCTTGGCTTCTCTGCTGATTGAGATTGCTTCCAGGATTGAAGCCGTGGTTAGGTTGATGAAGGAGCT TGGGGAGATTTGCGAATTCGAAGATGGAGAGCTGAAGGAGAAGTCGAAACGGAGTGAGATTTCGAGTGAAATGGAAACTGTGAAGGTCCTGCAGAGGATC TGA
AA sequence Show only first row Show all	>Lus10001528 pacid=23146002 polypeptide=Lus10001528 locus=Lus10001528.g ID=Lus10001528.BGIv1.0 annot-version=v1.0 MELRPHWQNNQTIFCQGLKTSQASGKQLLDKEEIVQMEWRINVGDGSSKALVPETSFARKVVGGLKELIVAGIFLRIWRFLVKAWNLGVDDPRKVVHCIK LGVALTVVSVFYYMRPLNDGVGGNAMWAVMTVVVVFENTVGATISKCLNRVFATSTAGFLALGVHWVASQSGQRFEPIITGLAVFILAFSVTFSRFIPTI KARFDYGCLIFILTFSFVSVSGYRVEQLFDLVHQRMATIIVGTSLVIIVTMFICPIWAGQELHSLLLRNMDKLASSLDGSMYLYFGESEEESDPDKQLAN KSLGYRCVLSSKAAEEAFANFARWEPGHGMFSYRHPWKQYLKVGAALRSCAYCIEALNGCINSTNNQSPDSIKNHLKESCLKVSSASSKITREVAKSMET MTKSPAAMELLTEEIGASVQEVQESLKSLPEKKTVPLMDVIQAATLASLLIEIASRIEAVVRLMKELGEICEFEDGELKEKSKRSEISSEMETVKVLQRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	0	1
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	1.0	0.9721
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	1.7	0.9382
AT1G47710			Serine protease inhibitor (SER...		Lus10019009 [exp]	2.8	0.9396
					Lus10038978 [exp]	3.9	0.9280
AT2G27240			Aluminium activated malate tra...		Lus10001846 [exp]	4.9	0.8998
AT2G29070			Ubiquitin fusion degradation U...		Lus10029298 [exp]	8.2	0.9372
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	9.9	0.8897
AT4G10265			Wound-responsive family protei...		Lus10031613 [exp]	10.4	0.8994
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	11.0	0.8717
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10041642 [exp]	11.7	0.9218

Compare expression of checked genes

Lus10001528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.