Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55120 594 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13790 587 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT5G11920 555 / 0 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT3G13784 540 / 0 ATCWINV5 cell wall invertase 5 (.1) AT2G36190 534 / 0 ATCWINV4 cell wall invertase 4 (.1) AT3G52600 528 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT1G62660 454 / 3e-153 Glycosyl hydrolases family 32 protein (.1) AT1G12240 452 / 5e-152 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008392 [exp] 576 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 541 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10021339 [exp] 539 / 0 AT2G36190 691 / 0.0 cell wall invertase 4 (.1) Lus10014219 [exp] 536 / 0 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10017015 [exp] 536 / 0 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10037631 [exp] 524 / 0 AT3G13790 633 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015613 [exp] 522 / 2e-180 AT3G13790 641 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 520 / 2e-179 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014217 [exp] 519 / 5e-179 AT2G36190 688 / 0.0 cell wall invertase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227500 [exp] 729 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227400 [exp] 640 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 562 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 558 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 555 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.003G112600 [exp] 473 / 5e-160 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 449 / 4e-151 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 422 / 8e-141 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001529 pacid=23146008 polypeptide=Lus10001529 locus=Lus10001529.g ID=Lus10001529.BGIv1.0 annot-version=v1.0 ATGCTTCCAGAACTTCTTGTGTTGTTGCTGTGCTGCTTCTTCAGTGGGCATGAAGCCGTAGAAATCATCTACCCACAATCTGGGGATTTGGAATGTCCTG CTTCTTCTTTGAATCAGCAGCCGCCGCATCTTCCCTCTTTCCACTTCCGACCTCCCAAAAATTGGCTCAATGATCCTAATGGTCCAATGTGGTACAATGG TGTATACCACTTGTTCTATCAGTACAACCCAGAAGGCGCATTGTTCAGTGACACAATGGTATGGGCACATTCAGTCTCCCACGATATGATCAACTGGATC GATCTCAATCTCGCCCTAACCCCAACCCAGCAATCCGATTCTAAGAGTTGTTGGTCCGGTTCCGCCACCATCCTTCCTGGTAGTAACCGGCCCGTAATTC TCTACACTGGAATCGACAGCAATGGCATCCAAGTCCAAAACTTGGCAGTCCCTAACAACATCTCAGACCCATTCCTTCAACAATGGGACAAATCACCTCA AAACCCCATCATGATCCCACCTCCAGGTGTTGCTGGGGACTCTTTCAGAGACCCCACCACTGCTTGGCAGGATGGGAAGAGATGGAACGTCGTCGTTGGA GGCCTCCTTGGTAATGAAGGGATGGCCATTCTGTATCAAACTGATCATGGTGATGATTTTGCTAAGTGGACTAAGGCTGAGCATCCTCTTTATTCGTCTC CGGAAACCGGAATGTGGGAATGTCCGGACTTCTTTCCCGTGTCGATTAACGACACGAATGGGTTGGATACATCAGTCGTTAAGGGTGTTAAGCATGTGCT AAAGATCAGTTCTTTTGTGCATGCGCATGATTATTACATGATTGGTAGCTATGATGCTGATGTGAGCAAGTATGTTCCGGAGATTGACTACACTGGGAAA GTTAGTGACTTGAGGTATGACTATGGAAAGTTTTATGCTTCCAAGACTTTCTTTGACATGCCAAAGAGCAGGAGGATTCTTTGGGGTTGGTTGAACGAGT CTGACAGTTCAGAAGATGACATTGCCAAGGGATGGGCTGGAGTTCAGTCAATTCCAAGAGAAGTATGGCTTCACAAGAGTGGAAAGCAATTGATGCAGTG GCCGATTGAAGAACTAAACAAATTAAGGGGTCAGCATGTTAAAGTTATGCATGAAAAGATGGTGGGTGGATCTGTTTTTGAAGTTGACGGCATCACTGCT TCACAGGCAGACGTAGAGATTGTGTTTGAGCTGGGAAGCAGCCTTAAAGATGCAGAGTTCTTAGATAGTACTCATGAGACAGAAGATCCCCAACAAATGT GTAGTGATATAAATTCATCTGCAAGAGGCAAACTTGGTCCATTTGGCTTGTTGGTTTTAGCTACAAAGGAATTGACTGAGCACACTGCAATTTACTTCCG AGTTTTCAAACGAAACAGCGGATCATATGTAGTGCTCATGTGCAGTGATCAAAGAAGGTCTTCCTTAAGAGATGGGATTGATAAGACCCCTTACGGAGCT TTTGTGGACATAGATCCTCAACACGAGAAGCTTTCTCTACGAACCTTGATCGATCACTCGATTGTCGAGAGTTTCGCAGGGGAAGGGAAGAGTTGTATAA GCAGCAGAGTTTATCCAACATTGGCTGTCCAGGATGAAGCTAAGCTCTTTGTGTTCAACAACGGGACTGAAGATGTAATGATACAAAGCATGAATGCTTG GAGCATGAACACTGCACAAATGGGTCGCCGAATTGACTCAGGCATGGACTTATCCACAAACGTCGAAGCTTAA
AA sequence Show only first row Show all	>Lus10001529 pacid=23146008 polypeptide=Lus10001529 locus=Lus10001529.g ID=Lus10001529.BGIv1.0 annot-version=v1.0 MLPELLVLLLCCFFSGHEAVEIIYPQSGDLECPASSLNQQPPHLPSFHFRPPKNWLNDPNGPMWYNGVYHLFYQYNPEGALFSDTMVWAHSVSHDMINWI DLNLALTPTQQSDSKSCWSGSATILPGSNRPVILYTGIDSNGIQVQNLAVPNNISDPFLQQWDKSPQNPIMIPPPGVAGDSFRDPTTAWQDGKRWNVVVG GLLGNEGMAILYQTDHGDDFAKWTKAEHPLYSSPETGMWECPDFFPVSINDTNGLDTSVVKGVKHVLKISSFVHAHDYYMIGSYDADVSKYVPEIDYTGK VSDLRYDYGKFYASKTFFDMPKSRRILWGWLNESDSSEDDIAKGWAGVQSIPREVWLHKSGKQLMQWPIEELNKLRGQHVKVMHEKMVGGSVFEVDGITA SQADVEIVFELGSSLKDAEFLDSTHETEDPQQMCSDINSSARGKLGPFGLLVLATKELTEHTAIYFRVFKRNSGSYVVLMCSDQRRSSLRDGIDKTPYGA FVDIDPQHEKLSLRTLIDHSIVESFAGEGKSCISSRVYPTLAVQDEAKLFVFNNGTEDVMIQSMNAWSMNTAQMGRRIDSGMDLSTNVEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10001529 [exp]	0	1
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	13.0	0.8224
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	13.3	0.8050
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	15.1	0.8177
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	17.0	0.8213
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	17.3	0.7942
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	21.1	0.8099
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	26.8	0.8119
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	33.5	0.8083
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	37.0	0.7913
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	39.3	0.8077

Compare expression of checked genes

Lus10001529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.