Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23660 179 / 6e-54 ATPPT1 polyprenyltransferase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033224 [exp] 370 / 1e-128 AT4G23660 456 / 3e-160 polyprenyltransferase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093700 [exp] 194 / 1e-59 AT4G23660 432 / 8e-151 polyprenyltransferase 1 (.1.2.3) Potri.005G093600 [exp] 153 / 2e-44 AT4G23660 413 / 2e-143 polyprenyltransferase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10001531 pacid=23145999 polypeptide=Lus10001531 locus=Lus10001531.g ID=Lus10001531.BGIv1.0 annot-version=v1.0 ATGGCGACGTTTCTCATACGCATCGCTTCCCGGATATCCCCCGGCGGTGGTTACCTTCCACGGCATGCCCTATGTTCTTCCCTTCCCTTGCTTCAAGTCT CCTCCATCGACTCATCGACCACCGGAAGTCCAAAGCCTGATTTCTCCTGTCCTTCGTTCCTCCACTTTGCACACTTCTCCTTCCTCTCTCGGGGTCCCCG TTTCCATCCGAGTACAGAAGGCTTGAATTTGAGGTTGGTGGATAGATTTTCGACACTACCGAGCCAGGAGGAGAATCAGGGCAGTATACAGGTTCTTAAG AAGGCAGACTTGTCGTCGATAGATCTCTACTTGCCTGTATATTTACGGTCTTACGCTAAGCTTGCCCGTCTTGATAAACCCATTGGGACTTCGCTACTTG CCTGGCCTTGTATGTGGTCAATTTCATTGGCAGCTTCGCCAGGGCATCTGCCTGATTTTAAGATGATGGCTTTGTTTGGTTGCGGGGCGTTCCTTTTACG AGGAGCTGGTTGCACCATTAATGACCTTCTCGACAGGGATATTGACACAAAGGTGGAGCGCACAAGGTTGAGACCGATTGCTAGTGGTCTTTTGACTCCA TTTCAGGGGTTATGTTTCCTTGGCTCTCAGTTGATTTTGGGTCTTGGAATTCTCCTTCAACTGAACGATTTTAGGTTTGTGCTAATGGTTCTTAGTCTTG TAACTAGCTTCTGCAGCTTTTTGTTTGCAACTCGATCTGAAGTCATCCGTCAGTTAGAGTTTCTTCGAGCATCTTGCAAATGTTAA
AA sequence Show only first row Show all	>Lus10001531 pacid=23145999 polypeptide=Lus10001531 locus=Lus10001531.g ID=Lus10001531.BGIv1.0 annot-version=v1.0 MATFLIRIASRISPGGGYLPRHALCSSLPLLQVSSIDSSTTGSPKPDFSCPSFLHFAHFSFLSRGPRFHPSTEGLNLRLVDRFSTLPSQEENQGSIQVLK KADLSSIDLYLPVYLRSYAKLARLDKPIGTSLLAWPCMWSISLAASPGHLPDFKMMALFGCGAFLLRGAGCTINDLLDRDIDTKVERTRLRPIASGLLTP FQGLCFLGSQLILGLGILLQLNDFRFVLMVLSLVTSFCSFLFATRSEVIRQLEFLRASCKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10001531 [exp]	0	1
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10020894 [exp]	14.6	0.6913
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10027389 [exp]	31.2	0.6498
AT4G39050			Kinesin motor family protein (...		Lus10017893 [exp]	135.4	0.5376
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10032423 [exp]	159.9	0.5477
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	239.2	0.5187

Compare expression of checked genes

Lus10001531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.