Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10950 506 / 9e-180 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 224 / 2e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 213 / 6e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 209 / 4e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 205 / 3e-62 GLIP7 GDSL-motif lipase 7 (.1) AT2G04570 201 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 201 / 9e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 198 / 1e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 192 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 189 / 5e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032399 [exp] 671 / 0 AT4G10950 495 / 1e-175 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000876 [exp] 243 / 8e-79 AT4G10950 166 / 1e-49 SGNH hydrolase-type esterase superfamily protein (.1) Lus10023070 [exp] 209 / 2e-66 AT4G10950 163 / 5e-49 SGNH hydrolase-type esterase superfamily protein (.1) Lus10002775 [exp] 209 / 5e-64 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 208 / 2e-63 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 206 / 1e-62 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 203 / 2e-61 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10041847 [exp] 201 / 1e-60 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 199 / 1e-59 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141300 [exp] 557 / 0 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G062342 [exp] 340 / 5e-117 AT4G10950 337 / 7e-116 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G064500 [exp] 216 / 2e-66 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G157800 [exp] 209 / 1e-63 AT4G10950 233 / 5e-73 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G076500 [exp] 208 / 1e-63 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 205 / 3e-62 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.017G130100 [exp] 204 / 4e-62 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G076600 [exp] 201 / 1e-60 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G067600 [exp] 201 / 1e-60 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 200 / 4e-60 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10001532 pacid=23146004 polypeptide=Lus10001532 locus=Lus10001532.g ID=Lus10001532.BGIv1.0 annot-version=v1.0 ATGATTCTTCCGCTTCTGTTGATCCTCTTCGCCGCCGTTTTCAACCAATCGATGACCCTAACTGTTCCTCAGCAGCTGTACGACTTCTCTCAGATGATCT TCGCCTACGAAAGTAACGGCCCTTTCGTCTCCCCTTCTTCTTCTCCGTCGTCCTTTTCCTCGCTTACTCCCGTCCCTTCCGTATCTCCTTCGCCGTACTC TAGTTCTCCGCCGCCTCTTGTTCCGGCGTTTTTCGTGATTGGCGATTCCGCCATCGATTGCGGTACCAACAACTACCTAGGCACCTTCGAACGCGCCGAT CGCCCTCCGTACGGAAGAGATTTCGACACGCGCAGGCCCACTGGAAGGTTCTGCAACGGACGGATCCCTGTTGATTATCTTGCATTACGCCTAGGGCTAC CATTTGTTCCAAGCTATCTGGGGCAGAATGGAACTTTGGGAGACATGATCCATGGAGTGAACTATGCTTCAGCTGGAGCTGGCATTATTTTCTCGAGTGG CTCAGAACTGGGTCAGAGAATCTCCTTGACTCACCAAGTTCAGCAGTCCACTGATTCGTTACAGACATTCATCTTGAACATCGGTGAGAAAGCTACAGAA GAGCTGGTATCTAACTCGGTTGTGTACATATCGATCGGGATCAATGATTACATCCACTACTACCTACCTAACATCTCCAATGTGCAAAATCTCTTCCTCC CCTGGAGTTTCAACCAGTTCTTAGCATCTTTAATGAGGCAGGAAATTAAGAACTTGTACGACATGAGTGTGAGGAAAATGGTGATCATGGGGATGCCTCC TATTGGCTGTGCCCCTCATTACCTGTGGAAGTATAACAGCAAGAATGGAGAATGTGTGAAGGAGATAAATGACATGATTATGGAGTTTAACTTTCTCATG AGGTACATGGTTGAGCAGTTAAATCACGAGCTCCCTGATGCCAAAATCATCTTCTGTGATGTTTATGAAAGTTCCATGGATATCATTAAGAACCATGAGC ATTATGGGTTTACTGAGACAACAAGTGCTTGCTGTGGTTTAGGTAAGTACAAGGGCTGGATAATGTGCATTGCGCCAGAAATGGCTTGTAGCAATGCCTC CAATCATATCTGGTGGGATCAATACCATCCTACTGCTGCAGCGAATGCGATTCTCGCTGACAATATATGGAATGGCTTGCATACGAGGATGTGCTACCCC ACGAACATGGAAGACATTGTATCTCGAAGAGCGCAGCGATTTTGA
AA sequence Show only first row Show all	>Lus10001532 pacid=23146004 polypeptide=Lus10001532 locus=Lus10001532.g ID=Lus10001532.BGIv1.0 annot-version=v1.0 MILPLLLILFAAVFNQSMTLTVPQQLYDFSQMIFAYESNGPFVSPSSSPSSFSSLTPVPSVSPSPYSSSPPPLVPAFFVIGDSAIDCGTNNYLGTFERAD RPPYGRDFDTRRPTGRFCNGRIPVDYLALRLGLPFVPSYLGQNGTLGDMIHGVNYASAGAGIIFSSGSELGQRISLTHQVQQSTDSLQTFILNIGEKATE ELVSNSVVYISIGINDYIHYYLPNISNVQNLFLPWSFNQFLASLMRQEIKNLYDMSVRKMVIMGMPPIGCAPHYLWKYNSKNGECVKEINDMIMEFNFLM RYMVEQLNHELPDAKIIFCDVYESSMDIIKNHEHYGFTETTSACCGLGKYKGWIMCIAPEMACSNASNHIWWDQYHPTAAANAILADNIWNGLHTRMCYP TNMEDIVSRRAQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10950			SGNH hydrolase-type esterase s...		Lus10001532 [exp]	0	1
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Lus10010712 [exp]	3.0	0.9300
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	8.0	0.9195
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10025117 [exp]	12.2	0.8020
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	14.8	0.9173
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	21.2	0.9143
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	21.7	0.9168
AT4G31380		FLP1	FPF1-like protein 1 (.1)		Lus10040802 [exp]	23.5	0.8907
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	23.6	0.9114
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	27.4	0.9071
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	29.2	0.9050

Compare expression of checked genes

Lus10001532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.