Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029951 [exp] 119 / 3e-30 AT5G53840 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10003941 [exp] 94 / 2e-21 ND 40 / 0.001 Lus10014200 [exp] 86 / 2e-18 ND / Lus10029952 [exp] 55 / 3e-08 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10039819 [exp] 52 / 4e-08 ND / Lus10003943 [exp] 53 / 1e-07 AT3G59160 50 / 1e-06 F-box/RNI-like superfamily protein (.1) Lus10030016 [exp] 45 / 5e-05 AT2G32970 799 / 0.0 unknown protein Lus10042272 [exp] 43 / 0.0002 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10028675 [exp] 41 / 0.0009 AT1G67190 44 / 1e-04 F-box/RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001533 pacid=23146005 polypeptide=Lus10001533 locus=Lus10001533.g ID=Lus10001533.BGIv1.0 annot-version=v1.0 ATGGCTAAGCGGATGGGAGACATATTCGCGGCGGCCGTGGCCAACAAATTTTTGCAACTGGAAGCCACCACCGCCAAGCTCGTGCTCTCCCACCCCTACA ATAATTATGAGCTGTCGTCGTCTGAGAATATCTTATGGCCTGCAAAAGAGATAGACATAAAGGAGGAGTACACGGGTTCTAGTTTGGGCCGCAGCGTCAT CCAACGCTTATTATTATTATTAGGCTTAGAGCCGCCGCCAGCAAGTACCAACCGATTTCGCCGCCTTGAAGTTCTCAAGCTGCAGGGACGTTTCGATTAT CCGTACAGGTGGGCCTACAAAATCGTCGGAAACATTAATCCTTTCGCTTGTTTCGCTAGCTCCCTCAGGGTGCTCTGTCTCAGCAATGTCAGGTTTCCTG ACGACACGATTCTGAATAGCATGATCGCTGGTGCTCCTCGGTTAGAGTGCTTGAGGCTGTCCAGGATCGATGGAATTCCAAATTTTCACATCCGTAACCA TCAGAACCTGAAAACCCTGGATGTCGCAGGATTTTTTGACCACTGTAGTTTCGACATTGCTGGGGTGCCCTCTCTGGAAACTCTGCACGTTCCCAACCTG CAAGTTTCCTTGTCGCCAAATAATGTGAAATCACTCTATATGACACGTTTATCGCAAGTAATACGTTCTGAGGACCTTACTAAGTTCATCTCCAAGTTTT CATCTCTCGAGTCGCTTAAGTTGCATGATAGTTCCCACAGGGTTCTAAAAGTTCAGATTTTTGGTCACCCTAAGCTTCAAGAAGTGGAGATAGACTACCA TGATGGGTCGCCGACCAAAGTGATTGAGATCGGCGATGCTCCGATGCTGACTAGTTTTGTTTTTAATGGACACAGCTCTCGCTTCCCTGCAATATTATTG TCCTCCTATGTTCCAGTCTCAGTCAACTGCAAACTCTTGAGATTGATTGATTTCCACGAGTTAAAACAATTCCTTGCCAAACTAAGTCAACATCCCTTGA CTTTCACTTTCTTTACTGATCCTTATGAGAACAAACAGCACACACATTATTGA
AA sequence Show only first row Show all	>Lus10001533 pacid=23146005 polypeptide=Lus10001533 locus=Lus10001533.g ID=Lus10001533.BGIv1.0 annot-version=v1.0 MAKRMGDIFAAAVANKFLQLEATTAKLVLSHPYNNYELSSSENILWPAKEIDIKEEYTGSSLGRSVIQRLLLLLGLEPPPASTNRFRRLEVLKLQGRFDY PYRWAYKIVGNINPFACFASSLRVLCLSNVRFPDDTILNSMIAGAPRLECLRLSRIDGIPNFHIRNHQNLKTLDVAGFFDHCSFDIAGVPSLETLHVPNL QVSLSPNNVKSLYMTRLSQVIRSEDLTKFISKFSSLESLKLHDSSHRVLKVQIFGHPKLQEVEIDYHDGSPTKVIEIGDAPMLTSFVFNGHSSRFPAILL SSYVPVSVNCKLLRLIDFHELKQFLAKLSQHPLTFTFFTDPYENKQHTHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001533 [exp]	0	1
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	1.0	0.9772
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	1.4	0.9661
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	1.7	0.9624
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	2.0	0.9624
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	5.1	0.9361
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	6.0	0.9510
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	7.1	0.9553
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	7.7	0.9288
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10019756 [exp]	7.8	0.8472
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	7.9	0.9488

Compare expression of checked genes

Lus10001533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.