Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06720 47 / 6e-06 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT1G09270 45 / 1e-05 IMPA-4 importin alpha isoform 4 (.1.2.3) AT4G16143 41 / 0.0004 IMPA-2 importin alpha isoform 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016850 [exp] 53 / 6e-08 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10037722 [exp] 53 / 7e-08 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10010028 [exp] 50 / 4e-07 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10036330 [exp] 49 / 1e-06 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10031398 [exp] 48 / 2e-06 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 48 / 3e-06 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10036452 [exp] 46 / 1e-05 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10041124 [exp] 46 / 1e-05 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010900 [exp] 52 / 1e-07 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.005G020400 [exp] 51 / 2e-07 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.010G001400 [exp] 50 / 3e-07 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.008G214100 [exp] 49 / 8e-07 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.013G007300 [exp] 45 / 2e-05 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001534 pacid=23146003 polypeptide=Lus10001534 locus=Lus10001534.g ID=Lus10001534.BGIv1.0 annot-version=v1.0 ATGGATTTCCAAGATCGCTGGTGCAACATGTGGAACGGCAGATACGGAAGCGGAGATGTCCAGATGGAGTCGGGGGTGGCTATCAAGCTAATGGAAATGG TAAAGAACCCCTCACTTGACGAGGAGGTTGTGGCGTGGATACTAACTCAGGTAGCATCGTTTGGAAGGAAAGCTACCGCCGTCGAAATCGCCCGTGATAT ATGTGACTCTGCTGCAAACCTTCTGATGAGCCGTTCAGCAAGAATTTGGGAAGCCGCGGGTAGAGTGATATCAGAAGCTTTCCACGGTCCTAATGATGGC GGAGTGGAAGAACATGCGCTTGCGACACTAATCGGCCTTCTTATTCAGAACCAAGAAGGCGTTACTTTAGATATTAAAAGAGAGATTGGCTGGGCGTTAT TGACTGCTACCCAGAAGTGGGCAACAAAAAGCCAGAAACTTCTTGCAAGCAACTGCCCTGAAGGGATTTGCAAACTAATCAGCACAGAAGATGAAGACCT TATATGCATTGGACTCAAAGGATTAGAAAACTTGCTGCGGCTTGGTGATGGTCCCGGTGCAAAAATGATTAAGGGTATTATGATCGCAAGCAACGTGGAG GATCACATCGACACAGTTATTTCATCTACTCGTATATGCGAGGGAACGAGGGAGTATGCTTTGAAGATCCAGCATATGATTTGA
AA sequence Show only first row Show all	>Lus10001534 pacid=23146003 polypeptide=Lus10001534 locus=Lus10001534.g ID=Lus10001534.BGIv1.0 annot-version=v1.0 MDFQDRWCNMWNGRYGSGDVQMESGVAIKLMEMVKNPSLDEEVVAWILTQVASFGRKATAVEIARDICDSAANLLMSRSARIWEAAGRVISEAFHGPNDG GVEEHALATLIGLLIQNQEGVTLDIKREIGWALLTATQKWATKSQKLLASNCPEGICKLISTEDEDLICIGLKGLENLLRLGDGPGAKMIKGIMIASNVE DHIDTVISSTRICEGTREYALKIQHMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10001534 [exp]	0	1
AT5G60370			unknown protein		Lus10023342 [exp]	1.0	0.9862
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10031383 [exp]	1.4	0.9782
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019106 [exp]	3.5	0.9763
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019105 [exp]	8.5	0.9516
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	9.4	0.9392
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10034881 [exp]	10.2	0.9319
AT1G01160		GIF2	GRF1-interacting factor 2 (.1....		Lus10008847 [exp]	11.0	0.9345
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	11.5	0.9639
					Lus10007549 [exp]	13.9	0.9663
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10040522 [exp]	14.7	0.9650

Compare expression of checked genes

Lus10001534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.