Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10940 190 / 2e-59 RING/U-box protein (.1) AT3G05670 57 / 9e-09 RING/U-box protein (.1) AT2G39100 49 / 2e-06 RING/U-box superfamily protein (.1) AT5G67120 44 / 9e-05 RING/U-box superfamily protein (.1) AT5G10380 43 / 0.0002 ATRING1, RING1 RING/U-box superfamily protein (.1) AT1G67180 43 / 0.0003 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT5G01520 42 / 0.0003 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT1G57730 41 / 0.0003 RING/U-box superfamily protein (.1) AT4G09110 42 / 0.0005 RING/U-box superfamily protein (.1) AT2G42030 42 / 0.0006 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032402 [exp] 621 / 0 AT4G10930 553 / 3e-179 unknown protein Lus10023068 [exp] 609 / 0 AT4G10930 586 / 0.0 unknown protein Lus10015213 [exp] 56 / 2e-08 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 55 / 5e-08 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10005237 [exp] 44 / 0.0001 AT1G14200 72 / 1e-15 RING/U-box superfamily protein (.1) Lus10005859 [exp] 42 / 0.0002 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 42 / 0.0004 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 42 / 0.0005 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10004467 [exp] 41 / 0.001 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089900 [exp] 322 / 6e-100 AT4G10930 506 / 5e-160 unknown protein Potri.005G021000 [exp] 59 / 3e-09 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.013G011400 [exp] 57 / 2e-08 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.006G099600 [exp] 48 / 3e-06 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 48 / 3e-06 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 47 / 5e-06 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 47 / 6e-06 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.008G215200 [exp] 43 / 0.0003 AT2G39100 248 / 1e-81 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 42 / 0.0004 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.004G106000 [exp] 42 / 0.0006 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10001535 pacid=23146001 polypeptide=Lus10001535 locus=Lus10001535.g ID=Lus10001535.BGIv1.0 annot-version=v1.0 ATGATGGAGGTGGATTTCATCACCAGTGGGATGTACGACGAAGAGACCGTTCAAATCGAGGAACATCACGATAATTCTGTCATTGATGGTGAAAGATGTG GGATATGTATGGACTTCATCATCGACAGGGGGGTTCTTGATTACTGTCAGCACTGGTTTTGTTTTGGCTGCATCGACAACTGGGCTTCAATCACAAACTT GTGCCCTCTTTGCCAGGATGAGTTTCAATTGATCACATGTATTCCGGTGGGTCATGAAATGGTCTATGATACCCTTGGTAATAACAAGGTTGATGAGGAA TCATTGTCCAGGGGCAATGAATGGTCTGTTGAAGAAGATAGCAGCACTTTGTCTTTCCCTTCCTACTACATTGATGAAAATGCAGTTACCTGCCTGGATG GAAATGGTTGCAGAATCCGAAGTGAATCCATGAATATTGAAGAAGATCCGAATCTCGATACTTCCATCGCATGTGATTCCTGTGATACTTGGTGTATGGG TGAGGAACTGCCTCATAAGTCAGATGCAACTTCTGCACAGATGCCAAATGACCAATGTATGGAAACTTTCGATACAAGCAGTGTCACTGATGATTGCTTT CCTGGAAAGATGTCGGTCTGCGCTGTTGATCCTGGAGAGACAGCTGTTGTCATCTCTATGGTTGGAGGAAATAAGTGGGCTGAATTACCTACTGAAGAGT ATAGCCCTATCCGAGAAGTTGGCTTGGAGTTCAAGGTTGATGAAGTTCGGTCTGAGGCCCATCTTAACCCTCAAAATATACTGAATGGAATTGATGATAT CAAATCAATCTTGGAAGGTCCAGAACGTGAGGTTTCCTTGTCAAGTGATATATTGACTCATGCTGAATTGAAGAGCGGTCAGGCTGATGCTGCAGCCATT CAACCCAATTCAGGTGGCGGTCAGACTTCACAGAATTTGTTTACGGAGTCTGCAGTTGGTGTTCATTCTAGTATACCTGTGGAAAGCTCTTCATATGGTA ATTCTTGCAACAATATACAATTAACTATTCTGTTTTGCATTGAATTCCATATAGTTTCTAATCCTGAAAACTATGAGTTTGCTCTCAGCCAACTTCTTTA A
AA sequence Show only first row Show all	>Lus10001535 pacid=23146001 polypeptide=Lus10001535 locus=Lus10001535.g ID=Lus10001535.BGIv1.0 annot-version=v1.0 MMEVDFITSGMYDEETVQIEEHHDNSVIDGERCGICMDFIIDRGVLDYCQHWFCFGCIDNWASITNLCPLCQDEFQLITCIPVGHEMVYDTLGNNKVDEE SLSRGNEWSVEEDSSTLSFPSYYIDENAVTCLDGNGCRIRSESMNIEEDPNLDTSIACDSCDTWCMGEELPHKSDATSAQMPNDQCMETFDTSSVTDDCF PGKMSVCAVDPGETAVVISMVGGNKWAELPTEEYSPIREVGLEFKVDEVRSEAHLNPQNILNGIDDIKSILEGPEREVSLSSDILTHAELKSGQADAAAI QPNSGGGQTSQNLFTESAVGVHSSIPVESSSYGNSCNNIQLTILFCIEFHIVSNPENYEFALSQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	0	1
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	1.0	0.9274
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	1.4	0.9140
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	1.7	0.8803
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	2.8	0.8691
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	3.9	0.8525
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	6.0	0.7985
AT3G17740			unknown protein		Lus10031899 [exp]	7.1	0.8126
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026377 [exp]	7.2	0.7837
AT3G24060			Plant self-incompatibility pro...		Lus10011754 [exp]	8.0	0.7989
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	8.7	0.7991

Compare expression of checked genes

Lus10001535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.