Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32050 125 / 1e-32 neurochondrin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032403 [exp] 214 / 2e-65 AT4G32050 645 / 0.0 neurochondrin family protein (.1) Lus10023067 [exp] 192 / 1e-57 AT4G32050 538 / 0.0 neurochondrin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022800 [exp] 155 / 9e-44 AT4G32050 751 / 0.0 neurochondrin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05536 [flax] [poplar] Neurochondrin Neurochondrin
Representative CDS sequence Show only first row Show all	>Lus10001536 pacid=23146007 polypeptide=Lus10001536 locus=Lus10001536.g ID=Lus10001536.BGIv1.0 annot-version=v1.0 ATGCAGTTCATTTATCTCTCAGATCTTCTCATCGAAGCATTCGCTCCTGCTGATAAAGTTCATGCTCTTATTATGGCTGAATCAATGTTGTCTATATCCG GAGAGAAATGGCTGCTCCGGCAGCCAAAATTAACTGATCGCCAAGTGCCATTGCCAATTGACAGGTGTCTATTGGTTGTCTTGGAATCTGCAAGAGTAGA AGTGGCTGTTTTGCTGAATGAGCTGGCCTATCTGAAGTACGAAGCTTCAAAGAGGAAAGTTATTGATGAATCAACCATCATAAATATGATCAATGGGCTT AATGAGACAGCTACTATAGTGTTGGAGTATTTGCAAGATGCAAGGGAGCACGGAGAAAAGAAAGGAAATGACCTTCTTGCTTCAGTACGGCTTCTTGGGA GGGCGGAAGAATCAACTTGCATTGATTTGTTGAATGCTTTGTCGTACTGGGCAGAAGAGACTAATGATCAATCCGTTCTGATGATGGCGGCAAGTATGTT GGCACTAATATTAGATTCCACATCAGAGGCGGCCCTTTTACATCATCCAAAGTTCGACTTGAGATCTCTAAGCCGTCTATGTCAGCTCATTTCAAGAAGC TTAGCATTGTCTAAAAAGGGCACGGCAGATGACGTTGAAGCGCAAATGGATCTGATTGAGATTGTTACTGCAGGATTCTCAAGGTGGGCCAACCGGTTTC CCAGCCTAAAAGCAGCAGCAGCGCTTGAGGAAATCTGA
AA sequence Show only first row Show all	>Lus10001536 pacid=23146007 polypeptide=Lus10001536 locus=Lus10001536.g ID=Lus10001536.BGIv1.0 annot-version=v1.0 MQFIYLSDLLIEAFAPADKVHALIMAESMLSISGEKWLLRQPKLTDRQVPLPIDRCLLVVLESARVEVAVLLNELAYLKYEASKRKVIDESTIINMINGL NETATIVLEYLQDAREHGEKKGNDLLASVRLLGRAEESTCIDLLNALSYWAEETNDQSVLMMAASMLALILDSTSEAALLHHPKFDLRSLSRLCQLISRS LALSKKGTADDVEAQMDLIEIVTAGFSRWANRFPSLKAAAALEEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	0	1
AT5G60370			unknown protein		Lus10023343 [exp]	1.0	0.9280
AT4G38870			F-box and associated interacti...		Lus10034309 [exp]	2.0	0.9001
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040568 [exp]	3.0	0.8984
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	3.7	0.8634
					Lus10007551 [exp]	4.0	0.8286
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	4.2	0.8748
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	4.5	0.8488
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	4.9	0.8813
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10016562 [exp]	5.0	0.8755
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	5.2	0.8602

Compare expression of checked genes

Lus10001536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.