Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44510 163 / 9e-42 TAO1 target of AVRB operation1 (.1) AT5G17680 157 / 7e-40 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 157 / 8e-40 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G12010 147 / 1e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 147 / 2e-36 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16890 140 / 4e-34 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G51630 135 / 8e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G08450 135 / 2e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G36150 132 / 1e-31 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 125 / 3e-29 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010223 [exp] 696 / 0 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10024150 [exp] 693 / 0 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10015648 [exp] 693 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017420 [exp] 544 / 0 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10017418 [exp] 456 / 6e-148 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10018021 [exp] 429 / 1e-135 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10042778 [exp] 407 / 2e-132 AT4G12010 185 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 397 / 1e-124 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 395 / 7e-124 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 244 / 7e-69 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 219 / 2e-60 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 194 / 4e-52 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 191 / 1e-50 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 184 / 1e-48 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 184 / 1e-48 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 181 / 2e-47 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 176 / 5e-46 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 176 / 9e-46 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 173 / 5e-45 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001537 pacid=23170455 polypeptide=Lus10001537 locus=Lus10001537.g ID=Lus10001537.BGIv1.0 annot-version=v1.0 ATGGCTTGGAATGTTGTCAATGAAGAAGGCAAACGCCGCATATTGATAGATCCTAATGATATCCATCAGTTATTGTCAACGAAGAACCAATACTTGATAA ACGCAAAACATCCAGGTAAATCATTTTTCAACTTCTTCAAAGCCATAGCAAGAATGAAGAAAAGAGAAGTTGTTAACAATCATCGAAAAGGTTGTAATCC ATCGGAGGAACATAGAGCAATCCAAGGCATACATTTGAATTGTTGGAAGAAAGAGATGTATTTGGAAGCTGATGCCTTTGAAGGGATGAAATTTCTTACC TTCCTCAAAATTTGGAACAAGGAGAAGAGGGGATCTGGTGAACTTAACTTCCTTTCTGGTGAACTTAACTTCCTTTCTAATGAGTTGAGATGGTTGGAGT GGGAAGAATATCCTTCCAAATTCCTTCCATCCAAATTTTGTCCTCAACACCTTGTCCATCTCAAAATAAATTTGAGTCCAATTCAAAGATGCTGGAAAGG ATATGATCAACCCCAACTTGTGAACTTGATGGTGCTCAATCTCTCCTTGTGCTATAATCTAATTGCTATTCCAAACATATCAAGTTCTTCAAAGCTTGAA GAACTCCTTCTCAAGGGATGTATCAGCCTAGTTGAGGTACCTTCTGATGTTCAATATTTGACCAAGCTGATAACATTAGACCTCAGTCAATGTCGAAAAC TCAAGCGTCTTCCGCCTAAACTCGAATCAGAGTCTCTTAAGCATGTTAGAATGAGTAGGTGTTCCAATGTCAATCACTGCCCACAGATTATTTCAAACGA GTTGGTGGAATTGGATTTATCATGGACACCTCTCCAAGAGCTACCTAGTGCAATATACAATGTCAAGCAAGATGGAGTCCTAAACCTCAGCGGTAAAAAC ATTACCAAATTTCCTGCAATTACAACAAGCTTGAACACTTTTTCCTTGATCTATACTTCAATAAGAGAGATTGATTTGTCTGATTGTCATCAACATCAGA CTTCTTCTGAATTAATATTGCCGAGATTTTACGAGCTGGAGCTTAATGGAAATAAGGAACTCCAAACCCTGTCGAAGAATATATGGAAAATGGTCTCTTA TAAACTCTACATTTGGGGGTCCCCATTAATTGAAAGTCTACCGGAGATATCGGAGCCTGTTATTGGCTTAGCTTATCTTCATATAAGCTTTTGTGAAAGC CTCAAAAGCCTACCATCTAGCATCGGCAATATAAAATCTCTCAAGCACCTTGTTTTATATAAGACGGATATTAAGTCACTACCTTCCAGTATCCAAGAAT TGAGGGAGCTTGATACAATTTTCATGCAGCACTGCAAGAGTCTCGAGACAATCCCAAGCGATATCTATAAGATTCTCAACTTGAAATATTTGGCAGTGGC TAACTGTGAGCGTATTCAATATCTACCAGAACTCCCACCAAATCTGTGGGTATTGACTGTAAGTGGTTGCAAGTCTTTACAAGCTCTACCAAGCAACACA TGTAAGCTGGTGCATCTGAAGTCCCTCAAATTTCAGGATTGCCCACAATTGGACCAGACCATACCTGCTGAAATCGTGGCGAATTTCTTCGTTCAAGCCA GCTTGCCTTCGTCACCGAAGCGTGAAGTTGTATGTTCAAGAAGCGAGCTTCCGGACTGGTTTATGTACAAAAGCATGAATAGCAGTGTGAAGGTGGAGTT GCCTCTTCCTAATCATGGCGACCAACCAATGATTATGAAGGGAATTGCATTCGGTCTTGTGTTTTCTCCCCCCTATAGGGAGACTATAAGATGCGATTGC AAGGTCGGGAACACCATCATTGCATCTTGGTCTTCCTGTGTCTTTGGATTTAAAGGTGAGAACTCACCAGAAAAGCTTTGGTTGCAGTGCGACAAGTGGG ATGTGGGAAGTAAAGAAGATGAAGCATGGTATGTGAAGTATGCTGGGCTCTCTGTTTCATTCTATTTCTATGAAGAAGACGATAAGGAGATCAAAATAAA AGAATGTGGAGTCTCTCTGATATACTAA
AA sequence Show only first row Show all	>Lus10001537 pacid=23170455 polypeptide=Lus10001537 locus=Lus10001537.g ID=Lus10001537.BGIv1.0 annot-version=v1.0 MAWNVVNEEGKRRILIDPNDIHQLLSTKNQYLINAKHPGKSFFNFFKAIARMKKREVVNNHRKGCNPSEEHRAIQGIHLNCWKKEMYLEADAFEGMKFLT FLKIWNKEKRGSGELNFLSGELNFLSNELRWLEWEEYPSKFLPSKFCPQHLVHLKINLSPIQRCWKGYDQPQLVNLMVLNLSLCYNLIAIPNISSSSKLE ELLLKGCISLVEVPSDVQYLTKLITLDLSQCRKLKRLPPKLESESLKHVRMSRCSNVNHCPQIISNELVELDLSWTPLQELPSAIYNVKQDGVLNLSGKN ITKFPAITTSLNTFSLIYTSIREIDLSDCHQHQTSSELILPRFYELELNGNKELQTLSKNIWKMVSYKLYIWGSPLIESLPEISEPVIGLAYLHISFCES LKSLPSSIGNIKSLKHLVLYKTDIKSLPSSIQELRELDTIFMQHCKSLETIPSDIYKILNLKYLAVANCERIQYLPELPPNLWVLTVSGCKSLQALPSNT CKLVHLKSLKFQDCPQLDQTIPAEIVANFFVQASLPSSPKREVVCSRSELPDWFMYKSMNSSVKVELPLPNHGDQPMIMKGIAFGLVFSPPYRETIRCDC KVGNTIIASWSSCVFGFKGENSPEKLWLQCDKWDVGSKEDEAWYVKYAGLSVSFYFYEEDDKEIKIKECGVSLIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	2.0	0.8832
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	2.8	0.8687
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	2.8	0.8782
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	3.5	0.8700
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	3.7	0.8388
AT4G33490			Eukaryotic aspartyl protease f...		Lus10020874 [exp]	4.1	0.8313
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	6.2	0.8284
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	6.3	0.8441
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	6.3	0.8626
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034391 [exp]	8.0	0.8508

Compare expression of checked genes

Lus10001537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.