Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22610 1262 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1037 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1035 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1014 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 980 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 958 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 918 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 845 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 840 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 786 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009460 [exp] 1047 / 0 AT1G22610 627 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1044 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1043 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 981 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 971 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 967 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 942 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 788 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 711 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G107700 [exp] 1300 / 0 AT1G22610 1414 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.019G080000 [exp] 1290 / 0 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1035 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1030 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1025 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1021 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1018 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 998 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 991 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 975 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10001538 pacid=23170454 polypeptide=Lus10001538 locus=Lus10001538.g ID=Lus10001538.BGIv1.0 annot-version=v1.0 ATGGCGGGAGCTAAGCTAGTGGTGGAGGTAATCGACGCCGTCGACCTAATGCCGAAAGACGGCCAAGGCTCAGCGAGCCCATATGTTGAGGTGGAATTCA ACGGCACAAAGCTAAGAACTTCGACAAAATCCAAAGACCTCAACCCACAGTGGAACGAGAAGCTTGTTTTCAATTTAAGCAACGACGACGCCAGAGATCT ACCTAACTCCACCATTCAAGTAGTTGTCTATAACCATGGAAACGACGTCGTACCACCTAAGAACTTCCTCGGCAGAGTCAGAATCTCTGGCTCCTCTGTT GTTTTCTCTGATGAAGGTGAATCGGTTGGTGCTCAGCCTTACCCGCTTGATAAGCGTGGGCTTTTTTCACATATTAAGGGGGAGATTCTGTTGAAAGTCT ATGCTTCTGTCGGGAATCGCCGCCGTCCGGCGGCGATGGCGACGGCTGCTGAAGTTGAGATCGACCCGGGTTCGAATTCGGATTCGGTTGAAGAAGATGA ATTTCGTCGTAAGCGGGATAATCATGAACAGGGTGAGATGAAGGAGGATAAGAAACACAAGGAGAAGGATAAAGTTCGCACCTTTGACTCAATTGGCGGC GGCGGCGGAGGGTTTAGAGAAACCAACCAGAATTCGAATTCAGCTGAAGAAGAAGAGTTTCATCATAATCGGCATAATCATGAACATGGTGAGATGAAGG AGAAGAAGAAGCACAAGGAGAAGGATAAAGTTCGTATCTTTCACTCAATTGGCCACAACCAGAGCCACCACCATCAACAACTGCAGCCGCCGCCGCGGTA CGGCGGTGGCGGCGGGTTTGAAACGCAGTATCATGTGATGAGGGATACAACGCCGGTGGTGGAGACAAGAACGAGCTACGCAAGAGCTGCAACACCAGTA GCGAGCTCAGTGATGCATCATATGCATATGCCGAAGCAGAATCCGGAGTTCTTGCTAGTGGAGACGAGTCCGCCATTGGCAGCTAGGATGAGGTACAACA AAGGAGGAGACAAGACGTCGAGCACTTACGATTTAGTCGAAAAAATGCATTTCTTGTATGTCAGCGTTGTGAAGTGCAGAGATCTTCCTGTAATGGATGT CACAGGGAGTTTAGATCCTTATGTGGAAGTGAAGTTAGGGAACTACAAGGGGATGACAAAGCATCATGAAAAGAATCAGAATCCGACATGGCATCAGATT TTCGCCTTTTCGAAGGAGCGGTTACAGTCAAATTTGCTGGAAGTTGTTGTGAAAGATAAGGACTTTGCTAAGGATGATTTCGTCGGGAGGGTGAACTTCG ATCTGACCGAGGTTCCTGTTCGAGTTCCACCGGATAGTCCGTTGGCTCCACAATGGTATAGGCTGGAGGATAAGAAAGGTTACAAAGGGAGAGGTGGAGA GATCGTGCTTGCTGTATGGATCTGTACACAAGCTGATGAAGCATTTCCTGAAGCTTGGCATAGTGATGCTCATGATATTGGTCATATAAACCTGGCGAAT ACGAGATCGAAGGTATATTTCTCGCCGAAGCTGTATTATTTACGAGTTAAAGTGTTTGAGGCTCAGGATTTAGTACCTTACGATAGAAGTCGAGTTCCCG ACACGTATGTGAAAGTCGTGTTGGGGAGTCAAGGGAGAAACACTAGACCTTCTCAGATGAGGACTGTGAATCCGATTTGGGGGGAAGAGCTAATGTACGT TGCTTCCGAGCCATTCGAGGAATTTATCATCGTTTCAGTTGAGGATAGAGTTGGGCCGGGGAGAGATGAGACATTGGGGAGGGTTGTTGTGTCGTTTCGA GATGTTCCTCAGAGATTGGAAACCAGTAAGATGCCCGAACCGAGGTGGTTCAATCTGATGAGGCCGTCGTATGGCGACGAGGATGGGAAGGAGAGGCATA AGGAGAAGTTTAGCAGCAAGATTCTTCTTGGGTTGACTTTAGAAGCAGGGTATCATGTTCTTGATGAGTCTACACATTTCAGCAGCAATCTCCAGCCGAG TTCAAAGCATTTGAGGAAGTCGAATATCGGGATACTTGAGCTTGGGATACTGAGTGCTAGGAATTTGCTGCCGATGAAGGGCAGGGATGGGAGGACGACC GATTCTTACTGTGTGGCGAAGTATGGTAACAAATGGGTTCGAACTCGGACACTCCTCAACACCCTGCATCCGAAATGGAACGAGCAGTTCAGTTGGGAAG TTTTCGATCCCTGCACTGTGATCACAATCGGAGTATTCGACAATTGGCACACAAATGGACACACAGACGCACAGGATAAGAGAATAGGCAAGGTGAGAAT CCGACTCTCGACTCTAGAAACCGATCGAATCTACACACATTACTATCCATTACTCGTTCTCCAACCGAACGGATTAAAAAAGCACGGAGAGATTCAGCTA GCTTTGAGATTCACCTGCACTGCTTGGGTCAACATGGTGGAACAATACAGCAGACCATTACTCCCCAAGATGCATTATGCACATCCAATCCCTGTTCGTT ACATCGACTGGCTAAGACACCAAGCTATGCAGATCGTCGCAACAAGACTCGCCAGAGCAGAACCGCCCTTGAGACGAGAAGTAGTCGAGTACATGTTGGA CGTTGATTACCACATGTGGAGTTTACGACGAAGCAAAGCGAACTTCCACCGTATAATGTCGGTATTATCAACCGTGACAGGAGTTTTCAAGTGGTTCAAC GAAATCTGTTACTGGAGAAACCCGATAACGACATGTTTGGTTCATATCCTGTTCTTGATCCTTGTTTGCTACCCTGAACTTGTCCTGCCTACTGTCTTTC TGTACTTATTCGTGATCGGGTTATGGAACTACCGGTTTCGTCCTAGGCATCCTCCGCATATGGACATAAGGCTGTTTCAAGCGGAACATGTTCATCCGGA CGAGCTGGATGAAGAATTCGATTCGTTTCCAACTTCTAGACCGGTGGATATTGTAAGGATGAGGTATGACAGGCTGAGGAGTGTTGCGGGGAGGTTTCAG ACCGTGATTGGGGATCTTGCGAGCCAGGGGGAGAGGGCTCATGCTATATTGAGCTGGAGGGATCCGAGGGCTACTGCGATCTTTATCGTGTTTGCACTTG TTTCTGCTGTGTTTATCTATGTCACACCGTTCCAGGTTGTGGCGGTTCTTGTTGGTGTGTTCATGCTTCGACATCCCAGGTTCCGGAGCCGGATGCCTTC TGTCCCTGTCAACTTCTTCAAGAGATTGCCCGCGAAATCCGATCTGTTGCTATGA
AA sequence Show only first row Show all	>Lus10001538 pacid=23170454 polypeptide=Lus10001538 locus=Lus10001538.g ID=Lus10001538.BGIv1.0 annot-version=v1.0 MAGAKLVVEVIDAVDLMPKDGQGSASPYVEVEFNGTKLRTSTKSKDLNPQWNEKLVFNLSNDDARDLPNSTIQVVVYNHGNDVVPPKNFLGRVRISGSSV VFSDEGESVGAQPYPLDKRGLFSHIKGEILLKVYASVGNRRRPAAMATAAEVEIDPGSNSDSVEEDEFRRKRDNHEQGEMKEDKKHKEKDKVRTFDSIGG GGGGFRETNQNSNSAEEEEFHHNRHNHEHGEMKEKKKHKEKDKVRIFHSIGHNQSHHHQQLQPPPRYGGGGGFETQYHVMRDTTPVVETRTSYARAATPV ASSVMHHMHMPKQNPEFLLVETSPPLAARMRYNKGGDKTSSTYDLVEKMHFLYVSVVKCRDLPVMDVTGSLDPYVEVKLGNYKGMTKHHEKNQNPTWHQI FAFSKERLQSNLLEVVVKDKDFAKDDFVGRVNFDLTEVPVRVPPDSPLAPQWYRLEDKKGYKGRGGEIVLAVWICTQADEAFPEAWHSDAHDIGHINLAN TRSKVYFSPKLYYLRVKVFEAQDLVPYDRSRVPDTYVKVVLGSQGRNTRPSQMRTVNPIWGEELMYVASEPFEEFIIVSVEDRVGPGRDETLGRVVVSFR DVPQRLETSKMPEPRWFNLMRPSYGDEDGKERHKEKFSSKILLGLTLEAGYHVLDESTHFSSNLQPSSKHLRKSNIGILELGILSARNLLPMKGRDGRTT DSYCVAKYGNKWVRTRTLLNTLHPKWNEQFSWEVFDPCTVITIGVFDNWHTNGHTDAQDKRIGKVRIRLSTLETDRIYTHYYPLLVLQPNGLKKHGEIQL ALRFTCTAWVNMVEQYSRPLLPKMHYAHPIPVRYIDWLRHQAMQIVATRLARAEPPLRREVVEYMLDVDYHMWSLRRSKANFHRIMSVLSTVTGVFKWFN EICYWRNPITTCLVHILFLILVCYPELVLPTVFLYLFVIGLWNYRFRPRHPPHMDIRLFQAEHVHPDELDEEFDSFPTSRPVDIVRMRYDRLRSVAGRFQ TVIGDLASQGERAHAILSWRDPRATAIFIVFALVSAVFIYVTPFQVVAVLVGVFMLRHPRFRSRMPSVPVNFFKRLPAKSDLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	0	1
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	7.3	0.8794
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	9.1	0.8652
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	9.5	0.8461
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10023546 [exp]	10.0	0.8450
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	12.5	0.8280
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	16.4	0.7650
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	17.0	0.8181
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10039265 [exp]	17.9	0.8020
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10032990 [exp]	18.0	0.8053
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10039385 [exp]	18.0	0.8187

Compare expression of checked genes

Lus10001538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.