Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72160 467 / 1e-164 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 448 / 8e-155 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G30690 290 / 2e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G51670 285 / 4e-94 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 282 / 4e-90 PATL2 PATELLIN 2 (.1) AT1G72150 278 / 1e-89 PATL1 PATELLIN 1 (.1) AT1G01630 57 / 4e-09 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 50 / 1e-06 ATSFH3 SEC14-like 3 (.1.2.3) AT4G08690 48 / 4e-06 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 47 / 6e-06 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009453 [exp] 369 / 1e-128 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009458 [exp] 373 / 2e-128 AT4G09160 275 / 2e-87 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10001542 [exp] 372 / 4e-127 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10031752 [exp] 288 / 2e-92 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038435 [exp] 280 / 1e-90 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001269 [exp] 267 / 6e-87 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 263 / 2e-86 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031175 [exp] 210 / 4e-67 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 195 / 3e-58 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079300 [exp] 494 / 6e-174 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 491 / 9e-173 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 388 / 1e-131 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 387 / 1e-131 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 387 / 1e-131 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 387 / 3e-131 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 385 / 7e-131 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 319 / 3e-106 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 278 / 4e-91 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G224800 [exp] 231 / 8e-73 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10001539 pacid=23170458 polypeptide=Lus10001539 locus=Lus10001539.g ID=Lus10001539.BGIv1.0 annot-version=v1.0 ATGCTGAAGAACACAATCCGGTGGAGGAAAGAGTTCCGAATCGACGAGCTGGTAGAGGAGGAAGATCTTCTAGGCGACGATCTGGAGAAGGTGATGTTCA TGCACGGCCACGATCGAGACTGCCATCCGGTCTGTTACAACGTGTTTGGAGAGTTCCAGAACAAGGAGCTGTATCAGAAGACGTTTTCCGACGAGGAGAA GCGGATGAAGTTCTTGAGGTGGCGGATTCGGTGCTTGGAGAAGAGTGTTAGGAGTCTCGATTTCGTGCCGGGAGGGGTTTCGACGATCTTTCAGGTGAAT GATCTGAAAAATTCTCCTGGATTGGGTAAGCAGGAGCTCAGATTGGCTACTAAACAAGCTCTCCAGCTTCTGCAGGATAATTACCCCGAATTCGTCGCCA AACAGGTGTTCATTAACGTTCCATGGTGGTATTATGCATTCTACACAATGATGAGTCCATTCATGACCCAGAGAACCAAGAGCAAGTTCGTATTCGCCAG CCCGGCCAGATCGCCAGAAACTCTGTTCAAATATATACCACCTGAAGAAGTACCGATCCAGTACGGTGGAATGAGCGTCGAGGACTGCGATTGCAACCCC GATAAATTCGCCTTCTCCGATCCAGTCACAGACATCGTTGTGAACTCGGGCACCAAGCAAACCGTTGAGATCATAATTTATGAGAAATGTGTGTTCATAT GGGAGGTCCGAGTAGTGGGATGGGAAGTGAGCTATGGTGCTGAATTCGTCCCCGATCAGAAGGACTCGTACACGGTTATAATCCAGAAACCGACGAAGAT GACTCCGATGAGTGAGCCGGTGGTGTCAAGCAAGTTCAAGGTGAGTGAACTGGGGAAGATACTGCTCACGATCGACAACCCGACGGCGAAGAAGAAGAGG CTTCTTTACAGGTTCAAGATCATCCCCCTAAGTGTCTGA
AA sequence Show only first row Show all	>Lus10001539 pacid=23170458 polypeptide=Lus10001539 locus=Lus10001539.g ID=Lus10001539.BGIv1.0 annot-version=v1.0 MLKNTIRWRKEFRIDELVEEEDLLGDDLEKVMFMHGHDRDCHPVCYNVFGEFQNKELYQKTFSDEEKRMKFLRWRIRCLEKSVRSLDFVPGGVSTIFQVN DLKNSPGLGKQELRLATKQALQLLQDNYPEFVAKQVFINVPWWYYAFYTMMSPFMTQRTKSKFVFASPARSPETLFKYIPPEEVPIQYGGMSVEDCDCNP DKFAFSDPVTDIVVNSGTKQTVEIIIYEKCVFIWEVRVVGWEVSYGAEFVPDQKDSYTVIIQKPTKMTPMSEPVVSSKFKVSELGKILLTIDNPTAKKKR LLYRFKIIPLSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	0	1
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10015876 [exp]	2.0	0.8561
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	4.1	0.8562
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	4.6	0.8548
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	6.3	0.8528
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	7.9	0.8118
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	8.1	0.8443
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	9.2	0.8280
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	9.8	0.8397
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	11.0	0.8350
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	12.0	0.8332

Compare expression of checked genes

Lus10001539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.