Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71691 392 / 3e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 274 / 7e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 265 / 2e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 265 / 2e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 265 / 3e-87 GLIP7 GDSL-motif lipase 7 (.1) AT1G33811 261 / 7e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 258 / 6e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 253 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 250 / 9e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 205 / 3e-64 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016929 [exp] 481 / 6e-172 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10009455 [exp] 320 / 6e-110 AT1G71691 232 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10009457 [exp] 286 / 5e-99 AT1G71691 209 / 6e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011998 [exp] 275 / 4e-91 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 275 / 4e-91 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 273 / 1e-90 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 270 / 6e-89 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 256 / 7e-84 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 247 / 3e-80 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G076600 [exp] 453 / 2e-161 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G102500 [exp] 449 / 8e-160 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G064500 [exp] 286 / 2e-95 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 285 / 2e-95 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 258 / 1e-84 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 250 / 2e-81 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 219 / 2e-69 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 217 / 7e-69 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 216 / 2e-68 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104600 [exp] 209 / 8e-66 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10001540 pacid=23170448 polypeptide=Lus10001540 locus=Lus10001540.g ID=Lus10001540.BGIv1.0 annot-version=v1.0 ATGGTCGACGAAATCGCTGAGCAACTGGGGTTGCCGTTGATTCCACCGTACACTCAAGGCGGCGACCTGACTCACGGCGTTAACTATGCCTCCGCCGCCG CCGGGATCCTTGACGCCACCGGAAGAAACTTCGTGGGTCGGATACCATTCGACCAACAAATAAGGAACTTCCAGAACACTCTAGACCGATTGTCCGGCAA CCTCGGAGCAATTGACATTGCTCGAGGCATTGGCCGAAGCATCTTCTTTGTTGGAATGGGAAGTAACGATTACCTCAACAACTACCTCATGCCCAATTAC CCGACTCGACAACAGTATAACGGTCAACAGTATGCCGACTTGTTGGTCCAGCAATACACCCGCCAGCTCACCATGCTTTACAATCTGGGAGCCAGAAAAG TGGCGATAGCTGGGCTTGGAGTAATGGGCTGTATCCCCAGCATTTTGGCCCAAAGCCCAGCTGGACGTTGCTCTGAGCAAGTAAACAATCTCATTTATCC CTTCAACCAAAACGTGAAGGCAATGATCAACCACTTGAACTCGAACCTACCCGGGGCAAGGTTCGTTTATATCGACATCCATCGAATGTTCAGCGACATG CTCGCCAACTCGAGAAACTATGGGTTTATGGTGACGAATAGAGGCTGCTGCGGGATTGGGAGGAATGCCGGACAGATAACGTGCTTACCGTTCCAGACAC CGTGCAGAAACCGGGCTCAATACATTTTTTGGGACGCGTTCCACCCGACCGAGGCGGTGAATGTGATGATGGGGAAGAAAGCTTTCAATGGAGACATGAG CTATGTTTACCCTATCAATATAGAGCAGCTTGCTCGAATCGGATGA
AA sequence Show only first row Show all	>Lus10001540 pacid=23170448 polypeptide=Lus10001540 locus=Lus10001540.g ID=Lus10001540.BGIv1.0 annot-version=v1.0 MVDEIAEQLGLPLIPPYTQGGDLTHGVNYASAAAGILDATGRNFVGRIPFDQQIRNFQNTLDRLSGNLGAIDIARGIGRSIFFVGMGSNDYLNNYLMPNY PTRQQYNGQQYADLLVQQYTRQLTMLYNLGARKVAIAGLGVMGCIPSILAQSPAGRCSEQVNNLIYPFNQNVKAMINHLNSNLPGARFVYIDIHRMFSDM LANSRNYGFMVTNRGCCGIGRNAGQITCLPFQTPCRNRAQYIFWDAFHPTEAVNVMMGKKAFNGDMSYVYPINIEQLARIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	0	1
AT5G66440			unknown protein		Lus10025994 [exp]	1.0	0.9898
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	4.0	0.9862
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10026566 [exp]	4.9	0.9794
					Lus10002045 [exp]	4.9	0.9855
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019106 [exp]	5.2	0.9786
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10014302 [exp]	5.7	0.9638
					Lus10007549 [exp]	6.0	0.9842
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	7.1	0.9832
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	7.5	0.9796
AT4G01290			unknown protein		Lus10039283 [exp]	7.7	0.9776

Compare expression of checked genes

Lus10001540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.