Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72160 439 / 2e-150 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 437 / 4e-147 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 407 / 2e-135 PATL2 PATELLIN 2 (.1) AT1G72150 386 / 1e-128 PATL1 PATELLIN 1 (.1) AT1G30690 350 / 5e-115 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G51670 333 / 6e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G01630 84 / 6e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G08690 78 / 1e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 77 / 3e-15 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G19650 75 / 5e-14 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009453 [exp] 632 / 0 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001539 [exp] 386 / 4e-132 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038435 [exp] 364 / 2e-120 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001269 [exp] 350 / 3e-116 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 343 / 4e-115 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031752 [exp] 342 / 2e-110 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 259 / 2e-80 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031175 [exp] 219 / 3e-68 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10025540 [exp] 206 / 1e-62 AT4G09160 210 / 2e-63 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079500 [exp] 550 / 0 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 545 / 0 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 504 / 2e-174 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 504 / 3e-174 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 498 / 6e-172 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 472 / 6e-162 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 465 / 2e-159 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 392 / 1e-131 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 343 / 1e-113 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G224800 [exp] 293 / 8e-94 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10001542 pacid=23170456 polypeptide=Lus10001542 locus=Lus10001542.g ID=Lus10001542.BGIv1.0 annot-version=v1.0 ATGGCACGACCTCAACCCGAGCGTATTCACAAGAAGGGCCCCTCCCCCCCCCCCCCCCCGCCGCCGGCGGCGGTCAAGGAAGAAGAGAAGAAGGAAGACG AGACTAAGACTGCTGAGGAAGCTCCGAAAACTGAAGAGAAGCCTGTTGAGGTTGAGGCTCCAGCGGCGGTAGCGACGGAAGTGGTCTCCGAGACTCCGGC CGCCGATGTGGAGGCGACGCCGGCGGTGGTGGAGGTGGAGAAGAAAGAAGAAGCGGAAGTCAAGATCGAAGAAGTGAAAGAAGAGACTGTAACTCCAACA CCAGACACCATCGTCAAGGCGACGGTCGTCGATGAGGACGGAGCAAAGACGGTGGAGGCGATCGAGGAAACAATCGTTGCTGTTGCTGGTTCCTCCACCG AGGAGCCAAAACCAGAGGAACCCAAAACAGAGGAGGCCAAAACGGAGGAAGTCAAAGCAGAGGAACCCAAAACAGAGGAAGCTGCTCCACCGCCGGTGCC GGAGGAAGTCTACATCTGGGGGATAAAGCTACTCGCCGACGAAAAATCCGACGTGATCCTTTTGAAATTCCTCCGAGCAAGAGACTTCAAGGTGAAAGAA GCCTTCACCATGATCAAGAACACCGTCCGCTGGAGGAAGGAATTCGGAGTCGATTCCCTCCTGGAAGAAGATCTCGCCGGCAACAACGAATTGGACAAGG TCGTGTTCATGAAAGGAACCGATAAGGAAGGCCACCCAGTCTGCTACAACGTCTTCGGCGGGTTCCAGGACAAGGAGCTTTACTCATACTGCTTCTCCGA TGAGGAAAAGCGTAAGACTTTCCTCCGTTGGAGGATCCAGCAGCTCGAGAAGAGCATCAGGAAGCTCGATTTCTCGCCTTCTGGTATCAACACGATCGTG CAGATCAACGATCTCAGGAATTCGCCCGGCCCGACCAAGAGTCATCTCAAGAAGGCCATGTCTCAGGTCATTTCCTTGCTCCAGGATAACTACCCCGAAT TTGCCGCTAGACAGGTGTTCATAAATGTGCCATGGTGGTACGCAGCATTCAACAAGATGATCTCCCCATTCCTTACTCAGAGGACTAAGAGCAAGTTCGT GTACGCCACATCTTCGAAATCGGCCGAAACCCTATTCAAGTACATAACTCCAGAACAGGTACCGATTCAGTACGGAGGGCTAAGCAAGGACGGTGACGAG AACGAATTCACTACCGAAGATGCTACGACAGAGCTCGTGCTCAAGCCGACATCGAAGCACACTATCGAGATCCCTGCTACCGAGGGCGACACTTTGGTGT GGGAGCTGAGGGTGTTGGGATGGGAAGTGAGCTACGGGGCCGAGTTCGCCCCTAGCGTCGAGAACGCATACACGGTGATCGTATCTAAGAACCGGAAGGT GGCTCCGACCGGTGACGAGTCACCGGTGATCAGCGACACGTTCAAGGCAGGGGAAGCAGGGAAAGTGGTGATCACCATTGATAACCAGAGTGGGAAGAAG AAGAAGGTGCTTTACAGGACCAAGACGAGACCAGTTTCTTAA
AA sequence Show only first row Show all	>Lus10001542 pacid=23170456 polypeptide=Lus10001542 locus=Lus10001542.g ID=Lus10001542.BGIv1.0 annot-version=v1.0 MARPQPERIHKKGPSPPPPPPPAAVKEEEKKEDETKTAEEAPKTEEKPVEVEAPAAVATEVVSETPAADVEATPAVVEVEKKEEAEVKIEEVKEETVTPT PDTIVKATVVDEDGAKTVEAIEETIVAVAGSSTEEPKPEEPKTEEAKTEEVKAEEPKTEEAAPPPVPEEVYIWGIKLLADEKSDVILLKFLRARDFKVKE AFTMIKNTVRWRKEFGVDSLLEEDLAGNNELDKVVFMKGTDKEGHPVCYNVFGGFQDKELYSYCFSDEEKRKTFLRWRIQQLEKSIRKLDFSPSGINTIV QINDLRNSPGPTKSHLKKAMSQVISLLQDNYPEFAARQVFINVPWWYAAFNKMISPFLTQRTKSKFVYATSSKSAETLFKYITPEQVPIQYGGLSKDGDE NEFTTEDATTELVLKPTSKHTIEIPATEGDTLVWELRVLGWEVSYGAEFAPSVENAYTVIVSKNRKVAPTGDESPVISDTFKAGEAGKVVITIDNQSGKK KKVLYRTKTRPVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001542 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	4.5	0.9422
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	4.9	0.9353
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	8.2	0.9337
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	10.1	0.9350
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	10.5	0.9265
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	12.0	0.9160
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10009453 [exp]	15.5	0.9252
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	16.5	0.9250
AT1G35780			unknown protein		Lus10020921 [exp]	16.6	0.8700
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	16.7	0.9206

Compare expression of checked genes

Lus10001542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.