Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35470 563 / 0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 514 / 0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 267 / 5e-85 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 267 / 5e-85 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 221 / 6e-68 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT1G06060 75 / 3e-15 LisH and RanBPM domains containing protein (.1) AT1G61150 66 / 5e-12 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT4G09300 45 / 3e-05 LisH and RanBPM domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009451 [exp] 858 / 0 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 337 / 2e-112 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009445 [exp] 159 / 1e-44 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 159 / 6e-44 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 134 / 2e-35 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10006084 [exp] 100 / 2e-22 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10011219 [exp] 68 / 2e-12 AT1G61150 392 / 6e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10004152 [exp] 67 / 2e-12 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10018464 [exp] 67 / 2e-12 AT1G61150 392 / 9e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 616 / 0 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 601 / 0 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.011G046200 [exp] 71 / 2e-13 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.002G029700 [exp] 66 / 3e-12 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) Potri.004G037600 [exp] 64 / 2e-11 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.005G233000 [exp] 58 / 2e-09 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [flax] [poplar] CLTH CTLH/CRA C-terminal to LisH motif domain CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10001544 pacid=23170451 polypeptide=Lus10001544 locus=Lus10001544.g ID=Lus10001544.BGIv1.0 annot-version=v1.0 ATGGCAACCGCTGCTAACAAGACCCCCGTCGCTTCAACCAATTACAGCAGCAACAATGGGAACACAACTACCACCACTAGCAGCAATTCCGGCAATCCGA CCCACCAAGATCCGGCTGCATACTTCCTCGCTATGGCGTCGGAATCCGCTGTGTACAGGGAGGAGGAGCGGGAGCGGAACGATCGGGAAGATGCGCCAAC GGAGCTGAACACGATTAACAGCTCGGGAGGATTCGTCGCCGTGTCGACGGATAAGCTTTCGGTGAAGTACACGCACGTCAATCACCACGGCCACGATGTC GGAGCTGTGCAGGCGAACAAGCCGGCTCCGGTTAAGAGATTGGTGTATTACTTCGAGATGACTGTGAGGAACGGCGGTGCTAGAGGGCAGATTGCGATTG GGTTCACTCATGAGACGTTCAAGATGTGCAGGCAGCCCGGGTGGGAAGTGAACAGTTGTGGGTATCATGGGGATGATGGCCATCTTTATCATGGTCAAGG AAAGGGACTGCCTTTCGGCCCAACTTTCACGACCAAGGATACTGTTGGCGCTGGTATTAACTATGCTTCACAGGAGTTCTTTTTCACACCTTCTGTTTCT TATTATGTCAGTAAAAATGGAGCACTTATTGGGACAGTAAAAAAGGAGATCAAGGATTCCCTATTTCCTACTGTTGCCGTTCACAGCCAGAATGAAGAGA TTGAAGTTAACTTTGGGCAAAAGCAATTTGCATTTGATATCAAGGACTATGAAAGACAGGAGAGGATGAAGCAACACTTGGTTATTGATAAAATATCTCT GCCCCAAAATGTCAGCCATGGACTCGTGCGATCATACTTGCTGCACTATGGTTATCAGGCTACCCTCAATTCTTTTGAGTTGGAGTGTAAGAGTACAGTT CCTCCAATATTGATGTCTCAGGAAAATGGCCTTGATTCTCAAGATATACTGTATGCATTAAATCAGAGGAGAGAACTTCGACAGCTAATCAGGAATGGCG AGATCGATGCAGCTATTTCTAAACTTCATGATTGGTTCCCGCAGATTCTTGAGGACGAAAATTCAGCTACTTGCTTCTTGCTCCACTGTCAAAAGTTCAT TGAACTGGTTCGGATTGGTGAACTGGAGGAAGCTGTGAATTATGGAAGAATCCAACTGGCAAAGTTCTTTGGGATGCCCGTGTACAACGATCTAGTTCAG GATTGTGTTTCACTGCTAGCGTACGAGCAACCGCTAAGATCCTCAGTCGGCTATCTTCTCGAAGACTCACAGCGCGAGGTAGTAGCAGACACGGTCAACG CCATGGTGCTGCTGACAAACCCGAACGGGAAGGACTTGCAAGGATGCTTGCAGTCGTATCTCGAGAGGTTAGTGAGGCAAATAACCGTTTGCTCCCTCGA GAAACGATCCTTGAACAATGATCAGGGTGAGGCTTTTAGTCTACACATCGCACTCAACAGTAACTACAATGCCAAGAGCTAA
AA sequence Show only first row Show all	>Lus10001544 pacid=23170451 polypeptide=Lus10001544 locus=Lus10001544.g ID=Lus10001544.BGIv1.0 annot-version=v1.0 MATAANKTPVASTNYSSNNGNTTTTTSSNSGNPTHQDPAAYFLAMASESAVYREEERERNDREDAPTELNTINSSGGFVAVSTDKLSVKYTHVNHHGHDV GAVQANKPAPVKRLVYYFEMTVRNGGARGQIAIGFTHETFKMCRQPGWEVNSCGYHGDDGHLYHGQGKGLPFGPTFTTKDTVGAGINYASQEFFFTPSVS YYVSKNGALIGTVKKEIKDSLFPTVAVHSQNEEIEVNFGQKQFAFDIKDYERQERMKQHLVIDKISLPQNVSHGLVRSYLLHYGYQATLNSFELECKSTV PPILMSQENGLDSQDILYALNQRRELRQLIRNGEIDAAISKLHDWFPQILEDENSATCFLLHCQKFIELVRIGELEEAVNYGRIQLAKFFGMPVYNDLVQ DCVSLLAYEQPLRSSVGYLLEDSQREVVADTVNAMVLLTNPNGKDLQGCLQSYLERLVRQITVCSLEKRSLNNDQGEAFSLHIALNSNYNAKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10001544 [exp]	0	1
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	3.9	0.8793
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	4.6	0.8961
AT5G06830			unknown protein		Lus10012023 [exp]	6.2	0.8829
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	10.0	0.8925
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	11.0	0.8731
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Lus10041896 [exp]	11.7	0.8355
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10027876 [exp]	12.8	0.8611
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	14.8	0.8794
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	15.6	0.8707
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	17.9	0.8634

Compare expression of checked genes

Lus10001544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.