Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35510 677 / 0 O-fucosyltransferase family protein (.1) AT2G01480 532 / 0 O-fucosyltransferase family protein (.1) AT1G14970 519 / 1e-179 O-fucosyltransferase family protein (.1) AT1G38131 471 / 2e-160 O-fucosyltransferase family protein (.1) AT1G38065 459 / 2e-157 O-fucosyltransferase family protein (.1) AT4G24530 270 / 2e-83 O-fucosyltransferase family protein (.1) AT5G65470 268 / 7e-83 O-fucosyltransferase family protein (.1) AT3G26370 265 / 3e-81 O-fucosyltransferase family protein (.1) AT1G22460 256 / 8e-78 O-fucosyltransferase family protein (.1) AT1G20550 249 / 5e-75 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009450 [exp] 908 / 0 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 523 / 0 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 516 / 4e-179 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 496 / 8e-171 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 489 / 3e-168 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 431 / 9e-147 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 426 / 3e-144 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 267 / 3e-82 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 266 / 2e-81 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080900 [exp] 731 / 0 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 551 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 546 / 0 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 421 / 9e-141 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 411 / 2e-137 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 277 / 2e-86 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 271 / 4e-84 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 264 / 6e-81 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 263 / 1e-80 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 259 / 9e-79 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10001545 pacid=23170449 polypeptide=Lus10001545 locus=Lus10001545.g ID=Lus10001545.BGIv1.0 annot-version=v1.0 ATGCACGGCTACAGCCGGTTAGGTGGCAGCTCGTCGTCCTCTTCCGGCCGTTCAATTACTGCTACCACCACTCCTTCTCCTCCTTCCTCCCCTCGTTTCC GTCACAGCCGCTCCTCCGGAGCGGCTGTGACGTACGGAGGAGGAGGATTTGGGAAGGGAAGCGGCGGGGCTGTGGCGAAGGAGAATTTGGTGGAGAGATT TGTTTTTCTGGTGATATCGTTGGTTTTCAGGCGGAGGGGGTTGTTGCTGTTTGCTCCCTTGTTGTATATATCTTGGGTTCTGTTGTACATGGGATCGATT GGATTTGATGTGGATTTGGATTTGAAGCATGGAGTTGTGGGCGGCGTGGTTCTGCGGCGGAGGAATGAGCCGAGGGGGTCGGTGTACCGGAGTCCTCAGG TTTTCAGGAAGCTTTGGCCGTATATGGAAGCTGAGAGTGCTGGTGGCAATGGAAGCAGCTCGAATGCGTTGATGAGAAGTTGGGATCCGAATTTGCGTCA GGATTGGAAGCCATGTCTCAACGGAAATGTGACTAATGCAGGATTGCCGGAGTCTAATGGTTTCCTTATAATTGAAGCTAATGGTGGATTGAATCAACAA CGGTTATCGAGGGGATCTGAGGCAATGTACTTATCCCCAATGCAGATATGTGATGCTGTTGCTGTAGCAGGATTACTAAATGCGACCCTTGTCATTCCGA TATTCCATTTGAACAGCGTCTGGCGTGATTCCAGCAAATTTGGAGACATATTTGATGAAGATTTCTTCATCGATGCCCTGAAGAATAATGTGAATGTAGT TCGTCAACTCCCGAAAGATGTACTTGAGCAGGCTGTAAGAATTGCACCTTTCTCCAATAGGCTGGCTCATGCAGTTCCTCCTAATGTCCAGGATCTTAGA TGCTTGGCTAATTTCCAAGCACTTAGATTCGCGGAATCGTTGAGAACGCTTGGTGATAAAATGGTTGAGCGGATGATTCAGAATAGTTCTCACACGGCAG GGAAATACGTTTCAGTCCATCTTCGATTTGAAGAGGATATGGTTGCCTTTTCATGTTGCGAGTATGACGGTGGGGAGGAAGAGAAACTGGAAATGGATCT TGCTCGAGAGAGAAGTTGGAGAGGGAAGTTTAGGAAAAGGGGAAGAGTAATACGACCAGGAGCAAATCGATTGGATGGGAAATGTCCTCTCACTCCATTG GAGGTGGGAATGATGCTTCGGGGGATGGGCTACGACAGCAGCACCCCATTGTACGTTGCAGCCGGCAATATTTACAAGGTGGAGAAGTATATGGCTCCAC TTAAGCAGATGTTTCCTCGCCTAGAAACAAAAGATACATTAGCTACTCCTGAGGAACTCGCATCGTTTAAGGGCCATTCGTCGAGGTTTGCAGCTCTTGA CTATACGGTTTGCTTGCAAAGTGAAGTCTTCGTCACCACTCAAGGTGGAAACTTCCCACACTTCTTAATGGGTCACAGGCGTTACCTATATGGTGGCCAT TCGAAAACTATCAGACCTGACAAAAGGAAGTTGGCCGTCTTGTTCGATAGCCCCCGTGTCAGATGGAAAGTGTTCAAGCGACAGATGCAAGACATGCTCC GACACAGCGACATCAAAGGTTGCGAGGTTAGAAAGCCTTCGGCATCGCTCTACACGTTCCCTATGCCGGATTGCATGTGTAGGATACCAAAGGAAGAAGA ATCGCCACAATCCATACCACGAGAGGATTCTGAAAGCTGA
AA sequence Show only first row Show all	>Lus10001545 pacid=23170449 polypeptide=Lus10001545 locus=Lus10001545.g ID=Lus10001545.BGIv1.0 annot-version=v1.0 MHGYSRLGGSSSSSSGRSITATTTPSPPSSPRFRHSRSSGAAVTYGGGGFGKGSGGAVAKENLVERFVFLVISLVFRRRGLLLFAPLLYISWVLLYMGSI GFDVDLDLKHGVVGGVVLRRRNEPRGSVYRSPQVFRKLWPYMEAESAGGNGSSSNALMRSWDPNLRQDWKPCLNGNVTNAGLPESNGFLIIEANGGLNQQ RLSRGSEAMYLSPMQICDAVAVAGLLNATLVIPIFHLNSVWRDSSKFGDIFDEDFFIDALKNNVNVVRQLPKDVLEQAVRIAPFSNRLAHAVPPNVQDLR CLANFQALRFAESLRTLGDKMVERMIQNSSHTAGKYVSVHLRFEEDMVAFSCCEYDGGEEEKLEMDLARERSWRGKFRKRGRVIRPGANRLDGKCPLTPL EVGMMLRGMGYDSSTPLYVAAGNIYKVEKYMAPLKQMFPRLETKDTLATPEELASFKGHSSRFAALDYTVCLQSEVFVTTQGGNFPHFLMGHRRYLYGGH SKTIRPDKRKLAVLFDSPRVRWKVFKRQMQDMLRHSDIKGCEVRKPSASLYTFPMPDCMCRIPKEEESPQSIPREDSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35510			O-fucosyltransferase family pr...		Lus10001545 [exp]	0	1
AT3G55600			Membrane fusion protein Use1 (...		Lus10037405 [exp]	14.8	0.7319
AT2G46550			unknown protein		Lus10023163 [exp]	14.9	0.7349
AT3G03940			Protein kinase family protein ...		Lus10023628 [exp]	20.5	0.7074
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10003799 [exp]	41.0	0.7035
AT4G35360			Uncharacterised conserved prot...		Lus10026563 [exp]	41.1	0.6931
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	48.5	0.6645
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10041535 [exp]	59.6	0.6919
AT5G24580			Heavy metal transport/detoxifi...		Lus10015583 [exp]	63.3	0.6930
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10033660 [exp]	64.9	0.6864
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	68.4	0.5929

Compare expression of checked genes

Lus10001545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.