Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016944 [exp] 92 / 4e-23 ND / Lus10035524 [exp] 88 / 1e-21 ND / Lus10006539 [exp] 79 / 3e-18 ND / Lus10006537 [exp] 75 / 9e-17 ND / Lus10027774 [exp] 74 / 9e-17 ND / Lus10002859 [exp] 58 / 2e-10 ND / Lus10039442 [exp] 52 / 7e-08 ND / Lus10041677 [exp] 49 / 8e-07 ND / Lus10028987 [exp] 47 / 2e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001546 pacid=23170452 polypeptide=Lus10001546 locus=Lus10001546.g ID=Lus10001546.BGIv1.0 annot-version=v1.0 ATGTGTTCATATAGTTTGAAATCGGACAATGCCTTCATCCGAGCCGGTACCGGCGACGGCCAATGGGGCTCAGCCAACTCCGCTTTTTTTTCCGTTTACG AGTACGATCCTGGCGTAGGCGCCGTTGATCAGAATGCTACCGTGGAGATGCCGATGAATGCCCCCCTTTACAGTTGGAAACATTTGGCCTCATTGGGAAT TTCTTTTAGTTCAGTATATTCACAGCTGGAAGTTAACGGCGTTACAATTCCATTTCATTGGTGGCCCACTCTGGCTAACGATCTAACCATCACTGGCAAA AATGGTCAGAAGTTTAATCTGATGGTCAATCGTCAGAGACTATGCCTTCTCGACATTACCAACGACTTCGGACCAATGAAGTGGCTGAGGATCAATGACC GGTTCGGTTGGTCCAAGTACGGTGTCAAAGTGCCTCAAGATGGTTTCGTAACATGGAGCGTGCGTGGCATGAATAATGGCGATGTTCTCGTAGATGGTCT TAAGAAAGAGGAGGAGGAGAAAGATGCTGCATTGGTGCCCTTCTCGTCGATGGTAGTTTGCTACCAACGTTTCATTACAAAGGTTAAGGTTTAG
AA sequence Show only first row Show all	>Lus10001546 pacid=23170452 polypeptide=Lus10001546 locus=Lus10001546.g ID=Lus10001546.BGIv1.0 annot-version=v1.0 MCSYSLKSDNAFIRAGTGDGQWGSANSAFFSVYEYDPGVGAVDQNATVEMPMNAPLYSWKHLASLGISFSSVYSQLEVNGVTIPFHWWPTLANDLTITGK NGQKFNLMVNRQRLCLLDITNDFGPMKWLRINDRFGWSKYGVKVPQDGFVTWSVRGMNNGDVLVDGLKKEEEEKDAALVPFSSMVVCYQRFITKVKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001546 [exp]	0	1
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10036752 [exp]	3.9	0.7059
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	4.8	0.7816
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	6.8	0.7816
					Lus10003941 [exp]	8.3	0.7816
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10013405 [exp]	8.7	0.6970
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	9.6	0.7816
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	10.7	0.7816
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002276 [exp]	11.5	0.6589
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	11.7	0.7816
					Lus10017294 [exp]	12.7	0.7816

Compare expression of checked genes

Lus10001546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.