Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40010 291 / 1e-96 Ribosomal protein L10 family protein (.1) AT3G09200 290 / 2e-96 Ribosomal protein L10 family protein (.1.2) AT3G11250 290 / 7e-96 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009447 [exp] 346 / 2e-118 AT3G09200 431 / 1e-153 Ribosomal protein L10 family protein (.1.2) Lus10040214 [exp] 290 / 1e-95 AT2G40010 484 / 6e-174 Ribosomal protein L10 family protein (.1) Lus10028276 [exp] 288 / 4e-95 AT2G40010 486 / 1e-174 Ribosomal protein L10 family protein (.1) Lus10009887 [exp] 279 / 3e-91 AT3G11250 491 / 7e-176 Ribosomal protein L10 family protein (.1) Lus10014841 [exp] 273 / 2e-89 AT3G11250 489 / 6e-176 Ribosomal protein L10 family protein (.1) Lus10006086 [exp] 88 / 1e-18 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191200 [exp] 292 / 8e-97 AT3G09200 505 / 0.0 Ribosomal protein L10 family protein (.1.2) Potri.008G066300 [exp] 290 / 6e-96 AT2G40010 510 / 0.0 Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00428 [flax] [poplar] Ribosomal_60s 60s Acidic ribosomal protein
Representative CDS sequence Show only first row Show all	>Lus10001549 pacid=23170450 polypeptide=Lus10001549 locus=Lus10001549.g ID=Lus10001549.BGIv1.0 annot-version=v1.0 ATGACCAAGGTATCAAAGGCGGATAAGAAGATACAATACGACAAGAAGCTATGTCGACTACTTGACGAGTACTCTCGAATCCTGATTGTGGAGGTTGACA ACGTAGGCTCCAAGATATCAGGAGAGGCCTACGTGGAGATTCTATTGTTCTCATGGGGTAATGTTGGTTTGATTTTCACCAAGGGTGACCTAAAGGAGGT TAAAGAAGAGATCGCCAAATACAAGGTGGGAGCTCCGACTCGTGTTGGTCTTGTAGAATCGATGTCGCGGTTCCTCCTGGTCCTTAACATCCCAACCAAG ATCAACAAAGGCACAGTCGAGATCACAACCACAGTGGACCTAATCAAGAAGGGTGATAAAGTCGGATCATCGGAGGTCGCGCTCCTCTCGAAGCTAGGCA TACGACCCTTCTCGTACGGCCTCATCGTCACCTCCGTCTATGATGACGACACCGCCTTCACCCCCGAGGTCCTGGACCTCATCGAAGACGACATCGCTTT GAAGTTTGCCTCTGGAGTAGAGAACCTCGCCTCGCCCGCCCTCGCCATCTTGTACCCCACCATTGCCACGGCGGTCTCTATGTTCACAACTGCTTACAGG AATGTGTTGTCTGTTGCCGTGGACATTGATTATTGCTTTCCTCAGGCTGAGAACGTTAAAGAGTATCTCAAGGATCCTAGCAAGTTTCTAGCTGCCGTAG CTGCTCTGGCAGCCGCCGCCACCCAGAGCGGTGGAGGAGCTAAGAAGGAAGAGGAGAAGAAGCCTGAACCAGAGGAGGAAGAAGAAGATGACGACTACGT AGAGGCCAGCAAGAAACATAGAGGCTGGCTGAAGGTGTTTATGCGTAATATTGGCCGGGATAAGTTATTTCTGGTGACATGCTACAAGAGACCCAATGTT AAAGTCTATGTGTCTTCGAATCTGTCGTTGTCGGCGATTGAGAAGAAACAGCCAGCCGAACTTGACAAGGATCTTTCGGCAGACCTTGCTCACTTGGGTC TTGAGCGTGTGGAAGAAGTAGAAAAGACTCATGATCGCAAGTGTAGTCTCCTTGTATGTAACTTCGAACTAGTTGATCAGTCAGAAACAGGCTGCTCTGC AGCCATTCGTGATTCTGCTGGGAAATCAAGATACAAGTTCAAGAGCCTGTCCCGTGAACTCTTCCGAAACTTTGATGAACGGTTAGGATGGTTCGTGCAA GGCTTTACTTCTGGCAGCAACAACAACAGCAACTTGTATTAG
AA sequence Show only first row Show all	>Lus10001549 pacid=23170450 polypeptide=Lus10001549 locus=Lus10001549.g ID=Lus10001549.BGIv1.0 annot-version=v1.0 MTKVSKADKKIQYDKKLCRLLDEYSRILIVEVDNVGSKISGEAYVEILLFSWGNVGLIFTKGDLKEVKEEIAKYKVGAPTRVGLVESMSRFLLVLNIPTK INKGTVEITTTVDLIKKGDKVGSSEVALLSKLGIRPFSYGLIVTSVYDDDTAFTPEVLDLIEDDIALKFASGVENLASPALAILYPTIATAVSMFTTAYR NVLSVAVDIDYCFPQAENVKEYLKDPSKFLAAVAALAAAATQSGGGAKKEEEKKPEPEEEEEDDDYVEASKKHRGWLKVFMRNIGRDKLFLVTCYKRPNV KVYVSSNLSLSAIEKKQPAELDKDLSADLAHLGLERVEEVEKTHDRKCSLLVCNFELVDQSETGCSAAIRDSAGKSRYKFKSLSRELFRNFDERLGWFVQ GFTSGSNNNSNLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40010			Ribosomal protein L10 family p...		Lus10001549 [exp]	0	1

Compare expression of checked genes

Lus10001549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.