Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007187 [exp] 198 / 3e-67 ND / Lus10030678 [exp] 195 / 5e-66 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G185732 [exp] 198 / 2e-67 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001550 pacid=23156102 polypeptide=Lus10001550 locus=Lus10001550.g ID=Lus10001550.BGIv1.0 annot-version=v1.0 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCT CTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGT TCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACAATTTGGCTAAGCTCATA GCTTGGTAG
AA sequence Show only first row Show all	>Lus10001550 pacid=23156102 polypeptide=Lus10001550 locus=Lus10001550.g ID=Lus10001550.BGIv1.0 annot-version=v1.0 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNNLAKLI AW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001550 [exp]	0	1
					Lus10007187 [exp]	1.7	0.9689
					Lus10008011 [exp]	2.4	0.9657
					Lus10030678 [exp]	3.0	0.9559
AT1G11340			S-locus lectin protein kinase ...		Lus10002717 [exp]	3.5	0.9505
					Lus10000298 [exp]	3.9	0.9381
					Lus10039450 [exp]	6.5	0.8593
					Lus10007186 [exp]	8.5	0.9089
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10016229 [exp]	9.7	0.7144
AT1G27461			unknown protein		Lus10007752 [exp]	21.9	0.7119
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	25.5	0.7680

Compare expression of checked genes

Lus10001550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.