Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59160 470 / 1e-169 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G39840 462 / 3e-166 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT3G46820 459 / 3e-165 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT2G29400 451 / 1e-161 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT1G64040 433 / 1e-154 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 424 / 2e-151 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 422 / 2e-150 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 414 / 2e-147 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 410 / 1e-145 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 260 / 1e-86 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004989 [exp] 508 / 0 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10016489 [exp] 491 / 8e-178 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004692 [exp] 465 / 2e-167 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 464 / 8e-167 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 464 / 8e-167 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 463 / 2e-166 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10042559 [exp] 462 / 7e-166 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 462 / 7e-165 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10021872 [exp] 429 / 4e-153 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245700 [exp] 487 / 5e-176 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 481 / 8e-174 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.010G197600 [exp] 468 / 2e-168 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 468 / 3e-168 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 463 / 2e-166 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 460 / 1e-165 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 446 / 2e-159 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 440 / 1e-157 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 426 / 4e-152 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 420 / 2e-149 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10001555 pacid=23154582 polypeptide=Lus10001555 locus=Lus10001555.g ID=Lus10001555.BGIv1.0 annot-version=v1.0 ATGTTAGACTGTCCTATGCTCCAGTGCTCCTGTGATATTCATGGACAGTACTCTGATCTCTTGAGGCTATTTGAGTACGGTGGCTATCCTCCTAGTGCCA ATTACTTATTCTTGGGAGACTACGTTGATCGTGGCAAGCATAGTTTGGAAACAATATGTCTTTTGCTTGCCTACAAAATCAAGTACCCAGAGAACTTCTT TCTCTTAAGAGGAAACCACGAATCCGCCTCTATAAACCGGATCTACGGATTCTACGACGAATGTAAACGAAGGTTCAACGTTCGACTTTGGAAGACCTTC ACTGATTGCTTCAATTGCCTACCTGTTGCTGCGCTTATAGACCACAAAATACTGTGCATGCACGGAGGCCTTTCTCCCGATCTTACGAATCTAGATCAGA TCAGGAACGTAGTCCGTCCGACTGATGTTCCTGACTCTGGCTTGCTCTGTGATCTGCTTTGGTCTGATCCCGGAAAGGACAGTAAAGGATGGGGGATGAA TGACCGTGGCGTTTCGTATACTTTTGGTCCGGATAAGGTGTCGGAATTCTTGATGAAGAATGATATGGACCTTATTTGCCGTGCCCATCAGGTTGTTGAG GATGGATACGAGTTCTTTGCGGATAGGCAGCTTGTGACGATATTTTCTGCTCCAAATTATTGTGGCGAATTTGATAATTCGGGTGCCATGATGAGCGTTG ATGAAACCTTGATGTGTTCTTTCCAAATACTCAAGCCAGCTGACAAAAGGTTTAGATTCGTGTGA
AA sequence Show only first row Show all	>Lus10001555 pacid=23154582 polypeptide=Lus10001555 locus=Lus10001555.g ID=Lus10001555.BGIv1.0 annot-version=v1.0 MLDCPMLQCSCDIHGQYSDLLRLFEYGGYPPSANYLFLGDYVDRGKHSLETICLLLAYKIKYPENFFLLRGNHESASINRIYGFYDECKRRFNVRLWKTF TDCFNCLPVAALIDHKILCMHGGLSPDLTNLDQIRNVVRPTDVPDSGLLCDLLWSDPGKDSKGWGMNDRGVSYTFGPDKVSEFLMKNDMDLICRAHQVVE DGYEFFADRQLVTIFSAPNYCGEFDNSGAMMSVDETLMCSFQILKPADKRFRFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10001555 [exp]	0	1
					Lus10041954 [exp]	4.6	0.9111
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	4.9	0.9426
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	7.5	0.9119
AT5G18420			unknown protein		Lus10008554 [exp]	10.6	0.9098
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10015027 [exp]	13.3	0.8977
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	15.0	0.9098
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10004108 [exp]	23.2	0.8851
					Lus10024932 [exp]	23.7	0.8764
AT1G49230			RING/U-box superfamily protein...		Lus10020859 [exp]	26.3	0.9011
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	28.7	0.9057

Compare expression of checked genes

Lus10001555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.