Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07420 459 / 1e-165 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 452 / 6e-163 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT4G22753 221 / 2e-71 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G12110 220 / 7e-71 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 218 / 4e-70 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT1G69640 64 / 6e-12 SBH1 sphingoid base hydroxylase 1 (.1) AT1G14290 59 / 3e-10 SBH2 sphingoid base hydroxylase 2 (.1) AT3G02590 54 / 2e-08 Fatty acid hydroxylase superfamily protein (.1) AT3G02580 48 / 3e-06 BUL1, DWF7, STE1 DWARF 7, BOULE 1, sterol 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016492 [exp] 471 / 7e-170 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 458 / 5e-165 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10004988 [exp] 254 / 5e-86 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10032193 [exp] 217 / 2e-69 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004321 [exp] 212 / 6e-68 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10024555 [exp] 196 / 1e-61 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 193 / 1e-60 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10004322 [exp] 190 / 5e-59 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10028908 [exp] 177 / 3e-54 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245300 [exp] 451 / 3e-162 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 446 / 2e-160 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G116500 [exp] 215 / 7e-69 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 214 / 2e-68 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 195 / 6e-61 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.002G061400 [exp] 62 / 6e-11 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 59 / 5e-10 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.005G199901 [exp] 47 / 9e-07 AT1G69640 207 / 2e-68 sphingoid base hydroxylase 1 (.1) Potri.017G116600 [exp] 46 / 1e-05 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.004G097500 [exp] 46 / 1e-05 AT3G02580 464 / 3e-167 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10001556 pacid=23154591 polypeptide=Lus10001556 locus=Lus10001556.g ID=Lus10001556.BGIv1.0 annot-version=v1.0 ATGGCTACCCTCTTCGAATCCGGATGGCAGTATTTGATCGCACATTTCAGCGACTTTCAGCTGGCTTGCATAGGCACTTTCTTGATTCACGAAGCAGTCT TTTTCTTATCTGGACTCCCTTGCATATTCCTGGAAAGAACTGGGTTGCTCAGCCAGTACAAAATTCAGGCTAAGAACAACGGCATAGCAGCTCAGGGGAG ATGTGTTACTCGTCTACTTGTGTACCACTTCTGTGTGAATCTACCGGTTGTGATTGTGTCCTATCCAGTCTTCAAGCGAATGGGCATGGAATCCAGTCTT CCACTCCCATCATGGAGAGTGGCGCTAGCACAGATAATGTTCTACTTCATCATAGAGGACTTTGTCTTTTACTGGGGACATAGGATCTTGCACACCAAGT GGCTGTACAAGCATGTTCATAGTGTCCACCATGAGTATGCTACACCGTTTGGCCTGACATCTGAATATGCACACCCTGCAGAGATTCTGTTCCTCGGATT CGCCACGATCGTCGGCCCTGCGATCACCGGACCGCATCTTTCGACGCTGTGGTTGTGGGTGGTGCTTCGGGTTCTCGAAACGGTAGAAGTTCACTCGGGT TTCCATTTCCCTTGGAGCCTGTCGAATTTCCTTCCTTTATACGGAGGTGCGGATTTCCATGACTATCACCATCGGCTTCTGTACACGAAATCCGGAAACT ACTCATCCACTTTCACATACATGGACCGGATATTTGGCACTGATCAAGGTTACAGAAAGCTGAAGGCTTTGAAGAGTGGTGAAGACGTACACGTCAGCAC CACCATAGCCAGCAGCAGCAAGATTCTTTAG
AA sequence Show only first row Show all	>Lus10001556 pacid=23154591 polypeptide=Lus10001556 locus=Lus10001556.g ID=Lus10001556.BGIv1.0 annot-version=v1.0 MATLFESGWQYLIAHFSDFQLACIGTFLIHEAVFFLSGLPCIFLERTGLLSQYKIQAKNNGIAAQGRCVTRLLVYHFCVNLPVVIVSYPVFKRMGMESSL PLPSWRVALAQIMFYFIIEDFVFYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPAITGPHLSTLWLWVVLRVLETVEVHSG FHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDRIFGTDQGYRKLKALKSGEDVHVSTTIASSSKIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10001556 [exp]	0	1
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	2.0	0.8529
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	6.3	0.7254
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	11.4	0.8058
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	12.7	0.7724
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	13.9	0.8129
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	14.3	0.7907
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	17.9	0.7522
AT5G56460			Protein kinase superfamily pro...		Lus10010319 [exp]	18.7	0.7570
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	19.8	0.7391
AT5G43150			unknown protein		Lus10004910 [exp]	20.7	0.7828

Compare expression of checked genes

Lus10001556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.