Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46790 314 / 2e-104 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 222 / 3e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 220 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 213 / 2e-64 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G14330 210 / 5e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 211 / 1e-63 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 207 / 1e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 206 / 1e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 201 / 1e-60 MEF22 mitochondrial editing factor 22 (.1) AT4G14850 200 / 1e-60 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004987 [exp] 357 / 2e-123 AT3G46790 715 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 224 / 6e-70 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 206 / 2e-64 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 201 / 3e-63 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028837 [exp] 202 / 4e-63 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001617 [exp] 206 / 7e-63 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 206 / 5e-62 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 203 / 1e-61 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 203 / 4e-61 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G037600 [exp] 335 / 2e-112 AT3G46790 997 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 226 / 1e-70 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 224 / 4e-69 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G137200 [exp] 222 / 5e-69 AT3G14330 787 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 219 / 8e-68 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 211 / 9e-65 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086900 [exp] 211 / 2e-64 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 211 / 1e-63 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 208 / 1e-63 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 208 / 2e-63 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001557 pacid=23154583 polypeptide=Lus10001557 locus=Lus10001557.g ID=Lus10001557.BGIv1.0 annot-version=v1.0 ATGCGAATCGAACCAGGACCGAAGGTCTGGGGAGCGCTACTCGGTTCGTGCAGGATCCATTGCAACGTCGAGCCGGCAGAGTGGGCAAGCACGAAGCTTT TTGAGCTCGAGCCTACAAATGCAGGGAACTATGTTCTTCTAGCCAATATTTACGCAGAAGCAGGAATGTGGGACGAGGTGAAGCGAGTCAAAAAGATGAT GGAATCGAGGGGGATCCGGAAACTCCATGGACGGAGTTGGATCGAAGTGAAGAGGGAGCTTCACTCGTTCGTATCAGTAGACGAGTTCAATCATCTGCTG TTCGAATTATCGTCTCAGATGAAGGAGAATGGGTATGTGCCGTGGACTAATGTGGTGCTGTACGATCTGGAGGAAGAGGAGAAGGAGAGGATTGTGCTTG GACATAGTGAGAAGTTGGCTTTGGCGTTTGGACTTGTGAATAGCAGTAAAGGGGAGGTGATTCGGATTACAAAGAGTTTGAGGCTGTGGGAAGACTGTCA TTCCTTTACGAAGTTTGTTTCGAGGTTTGTGGGGAGGGGGATTCTGGTTAGGGATGTGAATCGGTTTCACCGGTTCCGAGATGGGGTCTGTTCTTGTGGG GATTTCTGGTGA
AA sequence Show only first row Show all	>Lus10001557 pacid=23154583 polypeptide=Lus10001557 locus=Lus10001557.g ID=Lus10001557.BGIv1.0 annot-version=v1.0 MRIEPGPKVWGALLGSCRIHCNVEPAEWASTKLFELEPTNAGNYVLLANIYAEAGMWDEVKRVKKMMESRGIRKLHGRSWIEVKRELHSFVSVDEFNHLL FELSSQMKENGYVPWTNVVLYDLEEEEKERIVLGHSEKLALAFGLVNSSKGEVIRITKSLRLWEDCHSFTKFVSRFVGRGILVRDVNRFHRFRDGVCSCG DFW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10032764 [exp]	2.8	0.7606
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10001853 [exp]	3.9	0.7180
AT5G11090			serine-rich protein-related (....		Lus10038101 [exp]	4.7	0.6771
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	6.0	0.7095
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	9.3	0.7477
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	13.4	0.7300
AT4G18650			transcription factor-related (...		Lus10007282 [exp]	14.7	0.6360
AT4G25270		OTP70	organelle transcript processin...		Lus10031134 [exp]	15.6	0.7358
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	18.5	0.7069
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10007476 [exp]	24.0	0.6822

Compare expression of checked genes

Lus10001557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.