Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59180 330 / 1e-117 NRPB7 DNA-directed RNA polymerase II (.1) AT4G14660 74 / 7e-17 NRPE7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT3G22900 71 / 1e-15 NRPD7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT4G14520 51 / 4e-08 DNA-directed RNA polymerase II-related (.1.2.3) AT1G06790 50 / 1e-07 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004986 [exp] 349 / 4e-125 AT5G59180 325 / 2e-115 DNA-directed RNA polymerase II (.1) Lus10023620 [exp] 70 / 3e-15 AT4G14660 205 / 3e-68 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10023619 [exp] 70 / 3e-15 AT4G14660 266 / 2e-92 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10024250 [exp] 68 / 3e-14 AT4G14660 263 / 5e-91 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10035380 [exp] 52 / 2e-08 AT1G06790 235 / 3e-79 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) Lus10024251 [exp] 40 / 9e-05 AT4G14660 117 / 1e-34 RNA polymerase Rpb7-like, N-terminal domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377200 [exp] 340 / 2e-121 AT5G59180 340 / 1e-121 DNA-directed RNA polymerase II (.1) Potri.008G161700 [exp] 77 / 4e-18 AT4G14660 293 / 5e-103 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077300 [exp] 77 / 6e-18 AT4G14660 261 / 3e-90 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077200 [exp] 72 / 9e-16 AT4G14660 171 / 1e-54 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.002G044500 [exp] 43 / 3e-05 AT1G06790 228 / 1e-76 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF03876 [flax] [poplar] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10001559 pacid=23154568 polypeptide=Lus10001559 locus=Lus10001559.g ID=Lus10001559.BGIv1.0 annot-version=v1.0 ATGTTCTTCCACATTGTTCTTGAGCGGAACATGCAGCTGCACCCTCGCTATTTCGGCCGCAACCTTCGCGATAATCTCGTCTCCAAGCTCATGAAGGACG TCGAGGGAACTTGCGGTGGTAAGCATGGGTTTGTGGTAGCCATAACTGGTATAGAAAGCGTTGGGAAAGGGTTGATCAGAGATGGCACAGGTTTCGTGAC GTTTCCAGTGAAGTACCAGTGCGTCGTGTTCAGGCCGTTTAAAGGCGAAGTCTTGGAAGCTGTTGTAACCATGGTGAACAAGATGGGATTTTTTGCTGAA GCTGGTCCGGTGCAGATTTTTGTGTCGAGCCATTTGATACCGGATGACATGGAGTTTCAAAATGGAGATATGCCGAACTATACGACTTCAGATGGATCGG TTAAGATCCAGAAGGATAGCGAAGTGCGTTTGAAGTTAATTGGAACCCGTGTCGATGCTACAGAAATCTTCTGCATCGGTACGATCAAGGACGACTTCTT GGGTGTGATCAATGATCCTACGACTACATAA
AA sequence Show only first row Show all	>Lus10001559 pacid=23154568 polypeptide=Lus10001559 locus=Lus10001559.g ID=Lus10001559.BGIv1.0 annot-version=v1.0 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCGGKHGFVVAITGIESVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEVLEAVVTMVNKMGFFAE AGPVQIFVSSHLIPDDMEFQNGDMPNYTTSDGSVKIQKDSEVRLKLIGTRVDATEIFCIGTIKDDFLGVINDPTTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	0	1
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	1.0	0.8271
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10028482 [exp]	4.7	0.7783
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10043294 [exp]	5.1	0.8138
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	7.5	0.8115
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	8.8	0.8079
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	12.6	0.8054
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	14.3	0.8083
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	16.3	0.8121
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	18.2	0.8014
AT5G08010			unknown protein		Lus10040520 [exp]	18.3	0.8105

Compare expression of checked genes

Lus10001559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.