Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29210 212 / 1e-57 splicing factor PWI domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004983 [exp] 939 / 0 AT2G29210 252 / 5e-72 splicing factor PWI domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036900 [exp] 254 / 1e-72 AT2G29210 263 / 6e-75 splicing factor PWI domain-containing protein (.1) Potri.001G244600 [exp] 238 / 5e-67 AT2G29210 253 / 1e-71 splicing factor PWI domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01480 [flax] [poplar] PWI PWI domain
Representative CDS sequence Show only first row Show all	>Lus10001561 pacid=23154585 polypeptide=Lus10001561 locus=Lus10001561.g ID=Lus10001561.BGIv1.0 annot-version=v1.0 ATGTCGGGCGGTTTCTTCCGGGGTACGTCGTTTGAGCAGGACAGTCGGTTCTCAAACAAGCAAGCTAAGCTGATGAAGTCGCAGAAGTTTCCTCCCGAGC TGGAACACCTGGTTGATATGACGAAAGTGAAGATGGACGTCGTGAAACCGTGGATTGCTACTCGGGTGACTGAGTTTCTTGGCTTCGAGGATGAAGTTCT TATCAACTTCATTTACGGTCTTCTTGACGCCAAGAAAGTTAATGGGAAAGAAGTTCAGATTCAACTTACTGGCTTCATGGAGAAGAACACGGGGAAGTTT ATGAAGGAGCTTTGGTCGCTTCTTCTAAGTGCACAGAAGAATGCCAGTGGTGTTCCTCAACAGCTTTTGGATGCGAAAGAAGAAGAAGCTCGGCAGAAGC AGGAAGAGAGAGACCGGATAGCTGCTGAAGTGCAGAAAAAGAAAGAGAAGGAGAACTTAGACTCAGAGTTGATAAGGCAAAGGACGATGGACGATGCGGC TGAGACTAAGGCCAACAATGCCTCAATGGATCGTAGCTCGAAGCAGATACAGCTGAAGGGTTCAAATGGTGGACCTGGTGATGAGAAAGAAACAGAAATA AGAAATGGCTCGAGGGGAAGGAGCAGGTCAGGAACTTACTACTTGTGCTCTCTAGGTCTCCCCGATCTGCTGATCATTCACCTTCCTCCCCTAGGGGCTC ACCTTCACGCATCAGAAGATCATTGTCGAATTCTAGAAGCTATTCTGGGGAAAGGAAAAAGCTCAGAAGTGTTTCCAGATCACCTGATGTTCGAGATCGT TCCGTGTCTCCTGAACGGCGAAGAAAGCGGTCATTTACTCCTCAACGGAGACGTTCACCTCGATTATCCGGGAGGTCATCTTATGCTAGGCAAAGATCCA GATCACCTTCAAGTAGCAGGTCGCCTTCTCCAGCGAGGCGTAGGTTGCGGTCTCCTTATCACCACAGATCACCTTCACCCATTCGGCGCCGCAGATCTCC TTCACCCCTTCGACGCCGCCGATCACCATCACCGCCTATACGGCGCCGCAGATCACCTTCACCCATTCGACGGCGAAGATCCCCTTCACCACTCCGCAGA AGGAATAGATCACGTTCTCCGGTACGACGGCGGAGATCTCCCTCGCCTATCCGTCAACGAAGGTCACCAGCTCCTGTCAGACGTCGTAGGACCCCTTCAC CTCCTAGAAGGCGTAGATCTCCATCGCCACAGAAGCAGCGTAGATCACCTTCTCCTCCACGTCGTAGATATGAAAGTAAGACGGAAATCTCCGTCCCCTG CCCGTCAAACTTCACCAGTTCCTACTCGAAGGAGGTCTCCCTCACCGTCTGATTCAAGATCCTCCTCTCCTATCCAGCGAAGGTCCCCTTCCCCTACAAG TAGAAGACCTTCTCTTCATTCTTCTAAAGAAAAACCCAGGAGTCGGGAAGTATCCTCTCCTGTACGTCCTCAGCGGTCTGGTGCAACGGATGCAAAGGAA CGAAAGGATTTGAGCCGTAGAATCCCGGCTGTCTTGTATTCACCTGAACGGTCTCCTGTTCAATCAGGATCTCCACCACCTGTAAAAAAGAGAAGTGACA ATGATGGCAGAAGTGGTGAGAATAAATCTAAGCCTTCACATAAGCCATCCGGCAGTAAGCTGAAGGATTCTCCAGTTAAAGCTGAATACAAGAGTAAGCA GTCTCTTGAAACTGGAGTAGGTCATCAAACTACCGATTCTAGAAGCCACATTAGAGTAGATAAAGGCAAGAGGGAACAAGAAGCAAGGAGCGAGATGCCG ACTGGAAGAATGGAGCATACTGAAGGTTCAGAGGGTCAGAAGTCGCCGGTGTTTAACCAAGCAGATACTCAGAAGACTGATAGACGCCAGAAAGCTGATA CTAAGGCCGACCATAGCAACGGTGGTGGTAGTAGGCTTGATTCTGATTCAGACAGAAGTGATAAGCACCTAATTGAGGGTAAAGAAAAAAGAAAGCATAA AAGGTCCTCGCATAGGCACGAAACATCATCAGACGATGATTACAGCCATGATTCTGAAATCGAGGGAAAGAAAGATAGTAAGAAAAGGAGGAAAGAAGAA AAGAAATTGCGCAAGGAGGACAAGCGCCGCAGACACGAGGAGCGGCGGCGCAAAAGAGAAGAACGACGGGCCGAGAAGAAGCTGAAACGTAAGGATCGAG ACGAAACTAGTTCTTCCGACGATGATCACGTCACGGAGAAGAGGAAAAAATCTCATCCAAATGATGATGACGAAAAGGATCATTCTGAACAGAAGAAGCT AGAGATTGAGCTAAGGAAGAAGGCTCTTGAATCACTGAAAGCCAAGAAGGGCATCGATCACTAA
AA sequence Show only first row Show all	>Lus10001561 pacid=23154585 polypeptide=Lus10001561 locus=Lus10001561.g ID=Lus10001561.BGIv1.0 annot-version=v1.0 MSGGFFRGTSFEQDSRFSNKQAKLMKSQKFPPELEHLVDMTKVKMDVVKPWIATRVTEFLGFEDEVLINFIYGLLDAKKVNGKEVQIQLTGFMEKNTGKF MKELWSLLLSAQKNASGVPQQLLDAKEEEARQKQEERDRIAAEVQKKKEKENLDSELIRQRTMDDAAETKANNASMDRSSKQIQLKGSNGGPGDEKETEI RNGSRGRSRSGTYYLCSLGLPDLLIIHLPPLGAHLHASEDHCRILEAILGKGKSSEVFPDHLMFEIVPCLLNGEESGHLLLNGDVHLDYPGGHLMLGKDP DHLQVAGRLLQRGVGCGLLITTDHLHPFGAADLLHPFDAADHHHRLYGAADHLHPFDGEDPLHHSAEGIDHVLRYDGGDLPRLSVNEGHQLLSDVVGPLH LLEGVDLHRHRSSVDHLLLHVVDMKVRRKSPSPARQTSPVPTRRRSPSPSDSRSSSPIQRRSPSPTSRRPSLHSSKEKPRSREVSSPVRPQRSGATDAKE RKDLSRRIPAVLYSPERSPVQSGSPPPVKKRSDNDGRSGENKSKPSHKPSGSKLKDSPVKAEYKSKQSLETGVGHQTTDSRSHIRVDKGKREQEARSEMP TGRMEHTEGSEGQKSPVFNQADTQKTDRRQKADTKADHSNGGGSRLDSDSDRSDKHLIEGKEKRKHKRSSHRHETSSDDDYSHDSEIEGKKDSKKRRKEE KKLRKEDKRRRHEERRRKREERRAEKKLKRKDRDETSSSDDDHVTEKRKKSHPNDDDEKDHSEQKKLEIELRKKALESLKAKKGIDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	0	1
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	2.4	0.9050
AT3G53440			Homeodomain-like superfamily p...		Lus10039632 [exp]	3.2	0.9162
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	3.5	0.9303
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10007984 [exp]	3.9	0.9071
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10043253 [exp]	5.3	0.8770
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	5.3	0.8868
AT2G25270			unknown protein		Lus10001929 [exp]	6.2	0.9151
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10022456 [exp]	6.9	0.8889
AT3G52110			unknown protein		Lus10029522 [exp]	6.9	0.9024
AT3G22520			unknown protein		Lus10041202 [exp]	7.2	0.9088

Compare expression of checked genes

Lus10001561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.