Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 633 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 627 / 0 RLK receptor lectin kinase (.1) AT4G02410 624 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 608 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 608 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 600 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 597 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 594 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60300 583 / 0 LecRK-I.9 lectin receptor kinase I.9, Concanavalin A-like lectin protein kinase family protein (.1.2.3) AT4G29050 583 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004982 [exp] 1268 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 999 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 993 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 760 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 744 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 660 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 657 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 655 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 650 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036300 [exp] 733 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 722 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 720 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 714 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 714 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 711 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 696 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 691 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 687 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.009G035701 [exp] 684 / 0 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10001562 pacid=23154571 polypeptide=Lus10001562 locus=Lus10001562.g ID=Lus10001562.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCTCCTTCGACCCTCTTCTGTATTTTCTTACTCCTTCTCAATTTCGCCGATTCAACAAATTTCACCTACAACGGCTTCGCCGGAGAAAATC TAATCACCGACGCCGAGGCCAAAATCCTCCCGGACGGCCTCCTCCAGCTCACCAACCACACTCAGCTAGTCACCGGCCATGCTTTCCACCGTCAACCAAT CCTTTTCCCACCCAACTCCTCCCTCTCCTTCTCCACCACTTTCGTCTTCGCCATGGTCCCGGAATCCCCTAACGCCGGCGGCCACGGAATCGCCTTCACA ATCTCCCAAGCCACCGACTTTACCAACGCCGTCGCCAGCCAGCACCTCGGCCTCTTCAACTCCACCAACATGGGCAGCGCGTCTAACCACGTCGTCGCTG TAGAACTCGACGCGATGCGCAGCCCGGAGTTCCAGGACATCAACGACAACCACATCGGAATCGACTTAAACACGTTGATCTCCGTCTCCCCCGCCACCGT GTCCTGGATCTCCGACCAGGACGGCGTCAACCGCACCCTCCGCCTCCTCAGCGGCGACAGAATCCAGATCTGGATCCGCTACGACGACTCAGCCAAACAA ATGAACGTCACCGTCGCTCCGTTCGGAACCCCTAAGCCTAACCGTCCTCTAATTTCAACCGATCTCGATCTCTCCACTTACTTCGTGGAGTCGATGTTCG TCGGATTCTCTTCCTCCACTAGCACCGTCACCAGTGCGCAGTACATACTCGGATGGAGCTTCACTAAATCGGCAGACTCTCATCCTCCGCCGCTGGATCT TCAATCGCTTCCAGTATCTCCACGGCCGGCCAAACTTCAGAAGAAACTAGGAGCGACAGCGACGGCGGCGATAATAATCCTATCAATCCTCCTCGCCGGA GCCGGAATCGGAACCTACGCCGTTCAATTGAGGAGATACAGAGAGCTGAGAGAAGATTGGGAAAAGGAATACAATCCGGAGCGGCTTTCGTACAGAGACC TGTACAGAGCGACTCACGGGTTCAAGGAGAAGCAGGTTCTCGGGTCGGGCGGGTTCGGGAAAGTCTACGGCGGAATCTTACCGACTTCGAAGATTCAGAT CGCGGTGAAGAGAATCTCTCACGATTCGAGGCAAGGGATGAAGGAATTTGTTGCGGAGATTGTGAGTATCGGGAAGTTGAGGCATCGGAATTTGGTGCAT CTGCTTGGTTACTGCCGGAGAAAGGGAGAGTTACTGTTGGTCTACGATTATATGCCTAACGGAAGTTTGGATAAGCTCTTGTTCTCCGACGAGAAGACGG AGAAGGCGACGGCGAAGACTCTCAGCTGGGCGCAGAGATTTAAGATCCTGAGAGGAGTGGCCGCAGGGCTGCTTTACCTCCACGAGGAATGGGACCAGGT CGTCCTCCACCGCGACATAAAGGCCAGCAACGTCCTGCTCGACGCCGATCTGAACGGCCGATTGGGCGATTTCGGTCTGGCGAGGCTATACGACCACGGG ACGAACCCGCAGACGACCCACGTCGTCGGGACAGTGGGTTACCTGGCGCCTGAGCTTTCCCGGCTGGGTAAAGCGACGACGGCGACTGACGTGTACGCTT TCGGAGTGTTCATGCTCGAGGTGGCGTGCGGGAAGCGGCCGATCGACGGCCGGCCGGGGGTGCCGGCGGAGGAGGTGGTGCTGGTGGACTGGGTGATCAA CTGGTGGAAGAGAGGGGAGATCACGGCAGCAGCCGATCCGAATATGGGGGGGGATTACACGAAGGAGGAGATGGAGTGGGTTTTGAAATTGGGGCTGCTC TGCTCGCACAATGTGGCGGCGGTCCGGCCGAGTATGCGGCAGGTGATGCAGTACTTGGACGGCGACGCGGAGTTACCGGCAGTAGAGGTGGAAGGAAGTG GGATTGGGGCGTTTGGTATGGGAAGAGGGGAGACGTCGGAGTTCGTGATGTCATTTGCTTCTTCTATGATGGGAAAGGATACGATGGTGAATTCCTTGTC CAGCGTGGATTCCATCCTGCACGGCGGCCGGTGA
AA sequence Show only first row Show all	>Lus10001562 pacid=23154571 polypeptide=Lus10001562 locus=Lus10001562.g ID=Lus10001562.BGIv1.0 annot-version=v1.0 MAASPSTLFCIFLLLLNFADSTNFTYNGFAGENLITDAEAKILPDGLLQLTNHTQLVTGHAFHRQPILFPPNSSLSFSTTFVFAMVPESPNAGGHGIAFT ISQATDFTNAVASQHLGLFNSTNMGSASNHVVAVELDAMRSPEFQDINDNHIGIDLNTLISVSPATVSWISDQDGVNRTLRLLSGDRIQIWIRYDDSAKQ MNVTVAPFGTPKPNRPLISTDLDLSTYFVESMFVGFSSSTSTVTSAQYILGWSFTKSADSHPPPLDLQSLPVSPRPAKLQKKLGATATAAIIILSILLAG AGIGTYAVQLRRYRELREDWEKEYNPERLSYRDLYRATHGFKEKQVLGSGGFGKVYGGILPTSKIQIAVKRISHDSRQGMKEFVAEIVSIGKLRHRNLVH LLGYCRRKGELLLVYDYMPNGSLDKLLFSDEKTEKATAKTLSWAQRFKILRGVAAGLLYLHEEWDQVVLHRDIKASNVLLDADLNGRLGDFGLARLYDHG TNPQTTHVVGTVGYLAPELSRLGKATTATDVYAFGVFMLEVACGKRPIDGRPGVPAEEVVLVDWVINWWKRGEITAAADPNMGGDYTKEEMEWVLKLGLL CSHNVAAVRPSMRQVMQYLDGDAELPAVEVEGSGIGAFGMGRGETSEFVMSFASSMMGKDTMVNSLSSVDSILHGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10001562 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	3.2	0.7380
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	3.5	0.7427
AT5G09310			unknown protein		Lus10041297 [exp]	4.6	0.7180
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	9.6	0.6898
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Lus10020222 [exp]	22.6	0.6220
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	24.2	0.6631
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	28.0	0.6522
AT2G23640		RTNLB13	Reticulan like protein B13 (.1...		Lus10039905 [exp]	31.6	0.6801
AT1G28280			VQ motif-containing protein (....		Lus10025443 [exp]	31.7	0.5700
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	32.4	0.6401

Compare expression of checked genes

Lus10001562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.