Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07480 220 / 4e-69 Transcription factor IIA, alpha/beta subunit (.1.2) AT1G07470 218 / 4e-68 Transcription factor IIA, alpha/beta subunit (.1) AT5G59230 59 / 2e-10 transcription factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004981 [exp] 371 / 4e-129 AT1G07480 193 / 4e-59 Transcription factor IIA, alpha/beta subunit (.1.2) Lus10016503 [exp] 326 / 2e-109 AT1G07470 349 / 1e-117 Transcription factor IIA, alpha/beta subunit (.1) Lus10040769 [exp] 300 / 3e-100 AT1G07470 354 / 7e-121 Transcription factor IIA, alpha/beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G036700 [exp] 256 / 1e-82 AT1G07470 358 / 1e-121 Transcription factor IIA, alpha/beta subunit (.1) Potri.001G244204 [exp] 256 / 2e-82 AT1G07470 343 / 4e-116 Transcription factor IIA, alpha/beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03153 [flax] [poplar] TFIIA Transcription factor IIA, alpha/beta subunit
Representative CDS sequence Show only first row Show all	>Lus10001563 pacid=23154586 polypeptide=Lus10001563 locus=Lus10001563.g ID=Lus10001563.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCATCCACCACCACCAGCTCCGTTTACATCCACGTTATCGAGGATGTAATCAGAAAGGTCCGCGAGGAGTTCAACGGCGGTCCGGGCGAGG ACGTCCTGAATGAACTCCAAGGCATTTGGGAGATGAAGATGATGCAAGCGGGAGTGATTTCGGGGCCAATAGAGCGAAATTCAGCTCAGAAGCAGGCACC TGGAGGTCCTACTCCAGTCCATGACCTTAATGTACCGTATGAAGGCACTGAGGAGTACGAGACTCCCACTGCTGAGATGCTATTCACTCCTACGCCAATG CAGACACCAATGCAGACGCCATTACCTGCACATACTCCTTTGCCTGGAACTGCAGACAATTCCTCCATGTACAACATTCCTACTGGAAACAGTAGTGAAT ATCCTACCCCTTTAAGTGATACTGGTGGTAATAATGGCAATGCAGAGACTAAACCGGGACGACATAGCCCATACATGCAATCTCCTTCTCCTTGGATGCA GCAAAGGCCAGCTATCGGTGTTGATGTTAATGTTGCTTATGAGGAAGGGCGGGAAGAGGCCCCCAATCAGCCCCTGATGCAGGACTTTTTGACGATGAAT TCTGGAAAGCGAAAACGTGATGATTTCCCCCCACCATACAATAATGGTGGATACATACCTCAGCAAGATGGAGCCGGGGATTCGGTATTTGTGAATTCAA AGGGAGGAATTGTGAACATTTCACTCGACATATTGAAAGTAGCAAGTTCCTCCAAGATTCCTCAACTGGATGGTCCTATTCCGAATCCTTATGACTCTAC ACCCAATGTTACTCGAACAAAGAGCAGGTGGAAGTGCATACTCAAGGATGGCATCATGCATATAAACAATAAGGACATTCTCTTCAATAAGGTGGATTTC TCAGACATCTCTTTTAACTTGATCGTCCTACTTAGGGGTTGGAAACTGGGACGGGATCCGGATCATGTCTCCAAATTTCTCAATTCCTGA
AA sequence Show only first row Show all	>Lus10001563 pacid=23154586 polypeptide=Lus10001563 locus=Lus10001563.g ID=Lus10001563.BGIv1.0 annot-version=v1.0 MAAASTTTSSVYIHVIEDVIRKVREEFNGGPGEDVLNELQGIWEMKMMQAGVISGPIERNSAQKQAPGGPTPVHDLNVPYEGTEEYETPTAEMLFTPTPM QTPMQTPLPAHTPLPGTADNSSMYNIPTGNSSEYPTPLSDTGGNNGNAETKPGRHSPYMQSPSPWMQQRPAIGVDVNVAYEEGREEAPNQPLMQDFLTMN SGKRKRDDFPPPYNNGGYIPQQDGAGDSVFVNSKGGIVNISLDILKVASSSKIPQLDGPIPNPYDSTPNVTRTKSRWKCILKDGIMHINNKDILFNKVDF SDISFNLIVLLRGWKLGRDPDHVSKFLNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07480			Transcription factor IIA, alph...		Lus10001563 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	2.6	0.9184
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018126 [exp]	4.9	0.8873
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	5.2	0.8852
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	5.3	0.8836
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	5.7	0.8672
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	6.6	0.8619
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	9.2	0.8707
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	9.8	0.8595
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	10.7	0.8775
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	10.9	0.8532

Compare expression of checked genes

Lus10001563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.