Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 603 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 595 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 585 / 0 RLK receptor lectin kinase (.1) AT3G55550 583 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 574 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 572 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 568 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 566 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 565 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 564 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004980 [exp] 1196 / 0 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 676 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 673 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 669 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 654 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 653 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 653 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 644 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 632 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035400 [exp] 776 / 0 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 768 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 753 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 744 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 735 / 0 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 735 / 0 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 687 / 0 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 662 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 660 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.009G035601 [exp] 659 / 0 AT3G45430 498 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10001564 pacid=23154590 polypeptide=Lus10001564 locus=Lus10001564.g ID=Lus10001564.BGIv1.0 annot-version=v1.0 ATGGCGCCATCTTTGCTTACCCGCCTCCGAATTCTAATACTTGCTCTCCACCTGGTCTCAGCTCAGGAGGGAAATAACCAGTTCGTCTACAACGGCTTCA TCGGATCGAACCTCACCATCAATGGCATGGCGAAAATCCACCCAAACGGCCTGCTCGAGCTAACCAACACCTCGAAACAACAAATCGGCCACGCCTTCTT CCCCTTCCCCATCGATCTCAACTCTTCTTCGCTCTCCTTCTCCACAACATTCATCTTCGCCATGGTCCCCGAGACTCCAACGCTGGGAGGTCACGGCATT GCCTTTGTCATCTCGCCGACTCCACACTTCGAAGGCGCCATAGCCACTCAGTACCTCGGACTCTTCAACTCCACCACGATTGGGCTTACTTCAAACCACG TGATTGCTGTCGAGTTGGACACGGTTCAGAACCCTGAATTCGGTGACATCAACAGCAACCATGTTGGTATAGACATCAACAACTTAACATCAATTCAATC TGCTAATGCTGCATACTTCACTGAAGGTGAAGAAAAGGAGCTCGAGCTCATTAGTGGAGATCCTATCCAGGTATGGATAGATTACCAAGCAAGCAACAAG GAGCTAAACGTCACACTTGCTCCAATAAGAACAAGCAAACCAGATAAGCCGCTCCTGTCAACAACCGATCTTAATCTAGACGTACAGGATCGAATGTACG CTGGTTTCTCATCATCCACAGGCTCAGTAGCTAGCCACCACTACATTCTCGGATGGAGCTTGGATTTAACTGGAAGCCAGGCTCGAGATCTCGACATCTC CAACCTGCCATCACTTCCACCAGAGAGAAACTCAGGAAACAGATCATCAGCAAACTTGAAGATTCTACTTCCAGTGGTGATCACAATTCTACTAATCACA TCAATTGCACTTACCGTCTACTTCACAAGGAAGAGATACGAAGAACTCCACGAAGATTGGGAAGAACAGTACGGTCCACAGAGATTCTCCTACAGAGATC TCCACAAGGCAACCAAAGGATTCAATCAGATTTTGGGAGCAGGAGGATTCGGAAAGGTTTACAAAGGAACATTACATCCTTCTTCTTCTTCTTCTAGTTC TATTACCTCGAATGCTGAAATAGCAGTGAAGAAGATCTCACACGATTCGCGGCAAGGAATGAGGGAATTCGTGGCCGAGATCGCCACCATGGGAAGGCTA CGTCACAGGAACTTGGTCCAGCTTCTGGGATACTGCCGGAGGAAAGGCGAGCTGTTCTTGGTGTACGATCATATGCCTAATGGAAGTCTGGATAAATTAT TGTTCAAAAGCGATGGAAATGGAAGTTGCGAGACCCTAAACTGGGAGCAGAGATTCAAAATTTTGAAAGGAGTGGCGGCGGCGCTTCTCTACCTCCACGA GGAATGGGAGCAAGTGGTGACTCATCGGGACGTGAAGGCGAGCAACGTGCTTCTCGACGCGGATTTCAACGGCCGGTTAGGGGATTTCGGGCTGGCCCGG GTTTACGATCGGGGATCCGACCCGTTGACGACGAGCGTAGTGGGGACGATCGGGTATTTGGCGCCCGAGCTGACTAGGACGGGGAAGGCGACTACGAGTA GCGACGTTTTCGCGTTCGGGGTTTTTATGCTCGAAGTGGCGTGCGGAAGACGGCCAGTGGAGGCGCGTGAGGGGGAAGAGGCGGTGGTTTTGATGGATTG GGTTTCCGAGTGCTGGAGGAGAGGCGAGATTTTGGAGACGTGCGATCGGAGATTGGAAGGGTGTTACGCGGCGGAGGAGGTGGATATGGTTTTGAAGCTC GGGTTGATTTGTGCTCATCGGTCGCCGTCGGCGAGGCCGACGATGAGGAGGGTGGTGCAGTTTTTGGAGAAGAATGCGGTTTTGCCGCCGGAGATTCTGA CGGCGGTTGGTGGAGGGGATAGTGGTCGTCGCCAGGATGGTTCTGGTGATTGGATTCTGCAGTTTCGGGATGAGATTTCCGGTTCTTGTTCCTTGTCCGA TGGGGATTCGATCATCCGCACGGGTCGGTGA
AA sequence Show only first row Show all	>Lus10001564 pacid=23154590 polypeptide=Lus10001564 locus=Lus10001564.g ID=Lus10001564.BGIv1.0 annot-version=v1.0 MAPSLLTRLRILILALHLVSAQEGNNQFVYNGFIGSNLTINGMAKIHPNGLLELTNTSKQQIGHAFFPFPIDLNSSSLSFSTTFIFAMVPETPTLGGHGI AFVISPTPHFEGAIATQYLGLFNSTTIGLTSNHVIAVELDTVQNPEFGDINSNHVGIDINNLTSIQSANAAYFTEGEEKELELISGDPIQVWIDYQASNK ELNVTLAPIRTSKPDKPLLSTTDLNLDVQDRMYAGFSSSTGSVASHHYILGWSLDLTGSQARDLDISNLPSLPPERNSGNRSSANLKILLPVVITILLIT SIALTVYFTRKRYEELHEDWEEQYGPQRFSYRDLHKATKGFNQILGAGGFGKVYKGTLHPSSSSSSSITSNAEIAVKKISHDSRQGMREFVAEIATMGRL RHRNLVQLLGYCRRKGELFLVYDHMPNGSLDKLLFKSDGNGSCETLNWEQRFKILKGVAAALLYLHEEWEQVVTHRDVKASNVLLDADFNGRLGDFGLAR VYDRGSDPLTTSVVGTIGYLAPELTRTGKATTSSDVFAFGVFMLEVACGRRPVEAREGEEAVVLMDWVSECWRRGEILETCDRRLEGCYAAEEVDMVLKL GLICAHRSPSARPTMRRVVQFLEKNAVLPPEILTAVGGGDSGRRQDGSGDWILQFRDEISGSCSLSDGDSIIRTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53810			Concanavalin A-like lectin pro...		Lus10001564 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10004980 [exp]	3.0	0.8947
AT4G38670			Pathogenesis-related thaumatin...		Lus10036435 [exp]	4.0	0.8880
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023980 [exp]	4.7	0.8543
AT3G27210			unknown protein		Lus10035217 [exp]	6.7	0.8561
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Lus10036811 [exp]	8.7	0.8736
					Lus10029450 [exp]	10.6	0.8569
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Lus10036024 [exp]	11.2	0.8103
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	16.1	0.8612
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	20.1	0.8493
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10043023 [exp]	23.9	0.8151

Compare expression of checked genes

Lus10001564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.