Plant FIBer expression Database

Lus10001565 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004979
[exp]
171 / 5e-50 AT3G46750 57 / 1e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G035300
[exp]
80 / 3e-17 AT3G46750 170 / 1e-48 unknown protein
Potri.001G243900
[exp]
79 / 1e-16 AT3G46750 99 / 2e-22 unknown protein
PFAM info
Representative CDS sequence
>Lus10001565 pacid=23154572 polypeptide=Lus10001565 locus=Lus10001565.g ID=Lus10001565.BGIv1.0 annot-version=v1.0
ATGCCGCATCCGTTGAGAAGTGGATCCATGGCTCAACACGAAGCCATTGCTGCCAGACATCTAACCAACTCTCCCGTAACCCCGCCAAGCCCCAACATCG
AGCAGCTCGTGCGAGGTGGAGAAGCGATGAGATGGCACCCGCCAAACTCATCATCATCGTCGTCGTCGTCCTTGCAGCAGCGCGACACGGATTGCGAACA
CACGCCGCTGCAGAAGAAATCGGTGCTAGCGAAGGTGAAGGAGAAGGCCAAGAAATGGGGGCGATCTCTTAGCAAGAAGAAGCACAACGACGATGGTAGT
ACGAACAACAACAGTAATACTACACCTTCTTGGGGCGTCAGCTTGGATGATGAAGATGATGATGAACCTGAATACCTTGGAGCTCCATGTAAGATTCTCT
CGCAAGAAAATCTTCCAACTTCACTTTCCCTTCGTCAAACAATATGTATAGGTACTGTAGGTGTTGTCGGAACCAAGCCAAATAGCTCCTCGTTTCGCTT
GAGAAAAACTTGCCCGCAGCTTGGCTCGTTCGGAATCGAGCCGAGCTTCTTGTGGTTCGGTTCGGAAAAAGCTCAGCTTGGTCCGAAACGAAGCGCACTC
AAGCTAGTGTCGCGAGCGGCTCGTGGTTTGGTTCAGAAAAAGCTTGAACGCAGCCCGGCTCTATCCAGAACGAGCCGAGGTCTAGCCTGTCCTAGCTCAC
GAGCGAGCCAGCTCATTTGA
AA sequence
>Lus10001565 pacid=23154572 polypeptide=Lus10001565 locus=Lus10001565.g ID=Lus10001565.BGIv1.0 annot-version=v1.0
MPHPLRSGSMAQHEAIAARHLTNSPVTPPSPNIEQLVRGGEAMRWHPPNSSSSSSSSLQQRDTDCEHTPLQKKSVLAKVKEKAKKWGRSLSKKKHNDDGS
TNNNSNTTPSWGVSLDDEDDDEPEYLGAPCKILSQENLPTSLSLRQTICIGTVGVVGTKPNSSSFRLRKTCPQLGSFGIEPSFLWFGSEKAQLGPKRSAL
KLVSRAARGLVQKKLERSPALSRTSRGLACPSSRASQLI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10001565
[exp]
0 1
AT2G32750 Exostosin family protein (.1) Lus10007426
[exp]
6.8 0.7259
AT1G59970 Matrixin family protein (.1) Lus10041294
[exp]
17.7 0.6033
AT5G44950 F-box/RNI-like/FBD-like domain... Lus10018863
[exp]
23.9 0.5848
AT5G12180 CPK17 calcium-dependent protein kina... Lus10023346
[exp]
25.7 0.6487
AT3G04120 GAPC1, GAPC-1, ... glyceraldehyde-3-phosphate deh... Lus10014603
[exp]
29.2 0.6127
AT2G34930 disease resistance family prot... Lus10000236
[exp]
66.0 0.5871
AT1G02010 SEC1A secretory 1A (.1.2) Lus10009293
[exp]
79.2 0.5566
AT1G05260 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Pe... Lus10020064
[exp]
116.7 0.5261
AT1G11040 HSP40/DnaJ peptide-binding pro... Lus10020822
[exp]
121.6 0.5291
AT3G03450 GRAS RGL2 RGA-like 2 (.1) Lus10016893
[exp]
124.3 0.5572

Lus10001565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.