Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29200 953 / 0 APUM1 pumilio 1 (.1) AT2G29140 952 / 0 APUM3 pumilio 3 (.1) AT2G29190 707 / 0 APUM2 pumilio 2 (.1.2) AT3G10360 562 / 0 APUM4 pumilio 4 (.1) AT3G20250 478 / 4e-154 APUM5 pumilio 5 (.1) AT4G25880 432 / 1e-137 APUM6 pumilio 6 (.1.2.3) AT1G78160 191 / 2e-51 APUM7 pumilio 7 (.1) AT1G22240 182 / 5e-49 APUM8 pumilio 8 (.1) AT4G08840 166 / 2e-43 APUM11 pumilio 11 (.1) AT5G56510 163 / 4e-42 APUM12 pumilio 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004976 [exp] 1674 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 1202 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 1184 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10002708 [exp] 871 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 727 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 726 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10000516 [exp] 616 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10033353 [exp] 484 / 7e-157 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 485 / 3e-156 AT3G20250 880 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G034900 [exp] 1100 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 1077 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G058300 [exp] 887 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.010G201100 [exp] 882 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G036500 [exp] 568 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 558 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 494 / 5e-160 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 489 / 3e-158 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 481 / 4e-155 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 199 / 3e-53 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10001567 pacid=23154576 polypeptide=Lus10001567 locus=Lus10001567.g ID=Lus10001567.BGIv1.0 annot-version=v1.0 ATGGTGGGAGGAGCTAGTGAAGGATCATCATTTGGTGATGATTTAGAGAAGGAAATAGGGTTTATGCTGAACAGTAGACAAGCAGAAGAAGCTAATGATG ATTTTGAAAGGGAACTGAATTTGTACAGAAGTGGTTCTGCTCCTCCGACTGTGGAAGGTTCACTCAACGCCGTCGGCAGCTTGTTTGGCGCCGGCGCCGG CGAGGAGCTCAGGTCTGATCCAGCTTATTCAGCTTACTATTACTCAAACGTGAATATGAACCCTAGGTTGCCTCCTCCTTTGATGTCCAAGGAGGATTTG AGGTTCTCTCAGAGACTGAAGGGAGGAGGGAGTTCAGTGATAGGTGGCGGGATTGGTGATAGGAGGAATGTAAGTAGTAGTGGTAGGGCAATGCCTCCCG GTTTTGAGTCGAGGAAGGTGGAGAACGGAAGTTTCGATTCAAAGAAGGTGGTTTCGAATTCGAATGAATGGGGTGGTGATGGACTGATAGGGATTAAGCA GAAGAGTCTTGCGGAGATCTTTCAGGAAGACATGGCTCGTGTGACTCCATCCGTGGGCCACCCTTCTCGGCCATCCAGTCGAAATGTGTTTGGCGAACAT GTCGAGAGCATTGGTGCAGCTGAAGCTGATCTAACACACTTACGATCCGGTTCAAATGGTCAAGGCCAAGCTTCAGCTTATTCTTATGCTGCTGTTCTCG GCTCTTCTTTGTCGAGGAGCAATACCCCGGATGCTCAACTAATTGCTAGGGCTCCCAGTCCTTGTCCTCCTACACCTATAGGGCAAGGTAGAAATTCGAC ATCTGAAAAGCGAGGCGCTGCCACTGCTTCTACTAATGCATTTAGTAATGGTGTTCCGACTGGTTTGAGTGAGTCTGAAGATCTAGTGGCTGCTTTAACT GGTATGAACTTGTCTGCAAGAAATGGCATAGAACGGGGTGGTAATAATCATCAGAACTATTTGTTTGGTCAACAAAATCATGTGAATCAAGATGCATACT TTAAGAACTCGGACTCCATGCGTTCACAAATGCTGTATGCCGATTTTTGTGAGAGCAATGGTGGTAGTTCGGACCTCAACAATGGCTCTCCTTATGGAGA AAGGCGGGTTGGCCACTTGCAAAAGTCGGATCATTGGCATGGTAATTCGTCACTTCTGAACTACGGAATGGGCGAGGGATATACTGTTAACCCGGCATTG GCTTCTGAGTCACGTAGTTATGGGAGACTGGGGAGTCCTATTAATGCGAGAAGTAGTGCTCCTCCTCAGGCTCCGTACGTGGATCCGCTGTATCTCCAGT ACTTGAGGAGTCCTGAATACGCTGCATCGCAACTTTCAAGTCTTGGTGATCCGAACTCGTACATGAACTTACTCGAACTTCAGAAAGTGTATGCTGCTTA TGGAAATGCTAATTCTGGCAGTTCTAACCTCCATAACTACTATGGAAATGCTGCTGCTTATGGTATTGGCATGTCATATCCCGGGAGTCCTATCGCAAGT CCGGTCAGTCCATTACGACATAATGATATGAATCCGAGGTTTGCTTCCGGTATGAGGAGCTTGGGTGGTGGTGGTGGTGGTATCATGAGTCATTGGCATT TGGACGGTGGCCCGATGATGGATGAAAGCTTTGCTTCTTCGCTTCTCGAGGAGTTCAAGAGCAACAAAACCAAGTGTCTCGAACTTTGCGACATTACTGG CCATGTCGTTGAATTCAGTGCTGATCAGTACGGGAGCCGATTTATCCAACAGAAGCTGGAGACAGCAACAGTTGATGAGAAGACCCTGGTGTACAAGGAA ATCATGCCACAAGCTCTTGCTCTGATGACTGATGTGTTTGGTAATTATGTGATCCAAAAGTTTTTCGAGCATGGACTGCCATCACAGAGACGGGAACTAG CTTGCAAGCTACCTGGACATGTTTTGTCTCTTAGTCTTCAAATGTACGGATGTAGAGTGATTCAGAAGGCGATCGAGGTTGTGGACCTTGACCAGAAGAT CCAAATGGTTGGCGAGCTCGAGGGCCACGTTATGCGATGTGTTCGTGATCAGAACGGGAATCACGTCATCCAGAAGTGCATCGAGTGTGTTCCCGAGGAA AATATCCAGTTTATCGTCACGACGTTCTTCGATCAAGTAACGACCCTCTCCACCCATCCTTACGGTTGCCGTGTGATACAGAGAATTCTTGAACATTGCT TAGACCCCAAAACACAGAGTAAAGTCATGGATGAGATTCTGGGAGCTGTCAGCATGTTAGCACAAGATCAATATGGCAATTATGTTGTTCAGCATGTACT GGAGCATGGAAAGCCTCACGAACGATCAACCATCATAAAGGAGTTGGCAGGGAGGATAGTCCAGATGAGTCAGCAAAAGTTCGCTTCCAATGTCGTCGAG AAGTGCCTGACGTTTAGTGGCCCAGACGAACGCTCGCTATTGGTCAACGAGATGCTTGGCACCACCGATGAGAACGAGCCTCTGCAGGCAATGATGAAAG ACCAGTTTGCGAACTATGTGGTGCAGAAAGTGCTCGAAACTTGCGAAGATCAGCAGCGCGAGCTGATAATGACGCGAATCAAAGTCCATCTGAGTGCACT AAAGAAGTATACATACGGGAAGCACATCGTTGCTCGTGTCGAGAAGCTTCTTGCTGCTGGAGAAAGGAGAAGCGCTGCAGTGTCTCTGCACCCTGCACAG ACAGCGTAG
AA sequence Show only first row Show all	>Lus10001567 pacid=23154576 polypeptide=Lus10001567 locus=Lus10001567.g ID=Lus10001567.BGIv1.0 annot-version=v1.0 MVGGASEGSSFGDDLEKEIGFMLNSRQAEEANDDFERELNLYRSGSAPPTVEGSLNAVGSLFGAGAGEELRSDPAYSAYYYSNVNMNPRLPPPLMSKEDL RFSQRLKGGGSSVIGGGIGDRRNVSSSGRAMPPGFESRKVENGSFDSKKVVSNSNEWGGDGLIGIKQKSLAEIFQEDMARVTPSVGHPSRPSSRNVFGEH VESIGAAEADLTHLRSGSNGQGQASAYSYAAVLGSSLSRSNTPDAQLIARAPSPCPPTPIGQGRNSTSEKRGAATASTNAFSNGVPTGLSESEDLVAALT GMNLSARNGIERGGNNHQNYLFGQQNHVNQDAYFKNSDSMRSQMLYADFCESNGGSSDLNNGSPYGERRVGHLQKSDHWHGNSSLLNYGMGEGYTVNPAL ASESRSYGRLGSPINARSSAPPQAPYVDPLYLQYLRSPEYAASQLSSLGDPNSYMNLLELQKVYAAYGNANSGSSNLHNYYGNAAAYGIGMSYPGSPIAS PVSPLRHNDMNPRFASGMRSLGGGGGGIMSHWHLDGGPMMDESFASSLLEEFKSNKTKCLELCDITGHVVEFSADQYGSRFIQQKLETATVDEKTLVYKE IMPQALALMTDVFGNYVIQKFFEHGLPSQRRELACKLPGHVLSLSLQMYGCRVIQKAIEVVDLDQKIQMVGELEGHVMRCVRDQNGNHVIQKCIECVPEE NIQFIVTTFFDQVTTLSTHPYGCRVIQRILEHCLDPKTQSKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGRIVQMSQQKFASNVVE KCLTFSGPDERSLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCEDQQRELIMTRIKVHLSALKKYTYGKHIVARVEKLLAAGERRSAAVSLHPAQ TA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29200		APUM1	pumilio 1 (.1)		Lus10001567 [exp]	0	1
AT4G11060		MTSSB	mitochondrially targeted singl...		Lus10015200 [exp]	2.2	0.8033
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	6.2	0.8346
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	9.3	0.8375
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	17.9	0.7872
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	18.3	0.7300
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	21.5	0.7892
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10015021 [exp]	23.1	0.7406
AT4G32910			unknown protein		Lus10038723 [exp]	26.7	0.8225
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	28.8	0.8003
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	29.2	0.7782

Compare expression of checked genes

Lus10001567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.