Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59510 64 / 4e-14 RTFL5, DVL18 DEVIL 18, ROTUNDIFOLIA like 5 (.1) AT2G29125 59 / 3e-12 RTFL2, DVL13 DEVIL 13, ROTUNDIFOLIA like 2 (.1) AT3G46613 59 / 4e-12 RTFL4, DVL15 DEVIL 15, ROTUNDIFOLIA like 4 (.1) AT1G07490 55 / 6e-11 RTFL3, DVL9 DEVIL 9, ROTUNDIFOLIA like 3 (.1) AT3G55515 53 / 3e-10 DVL8, RTFL7 DEVIL 8, ROTUNDIFOLIA like 7 (.1) AT2G39705 49 / 7e-09 RTFL8, DVL11 DEVIL 11, ROTUNDIFOLIA like 8 (.1) AT2G36985 49 / 8e-09 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) AT1G53708 47 / 1e-07 RTFL9 ROTUNDIFOLIA like 9 (.1) AT4G13395 45 / 1e-07 DVL10, RTFL12 DEVIL 10, ROTUNDIFOLIA like 12 (.1) AT3G14362 44 / 3e-07 DVL19, RTFL10 DEVIL 19, ROTUNDIFOLIA like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040784 [exp] 62 / 2e-13 AT5G59510 84 / 1e-21 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10023399 [exp] 49 / 3e-08 AT2G39705 91 / 3e-25 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10002705 [exp] 47 / 5e-08 AT2G39705 86 / 1e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10021966 [exp] 46 / 8e-08 AT1G53708 73 / 8e-19 ROTUNDIFOLIA like 9 (.1) Lus10026526 [exp] 45 / 4e-07 AT2G36985 63 / 2e-15 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Lus10028393 [exp] 44 / 5e-07 AT4G35783 60 / 5e-14 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10041259 [exp] 44 / 9e-07 AT1G53708 70 / 2e-17 ROTUNDIFOLIA like 9 (.1) Lus10041846 [exp] 44 / 1e-06 AT4G35783 59 / 1e-13 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10034272 [exp] 40 / 2e-05 AT1G13245 72 / 5e-19 DEVIL 4, ROTUNDIFOLIA like 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242800 [exp] 62 / 1e-13 AT2G29125 71 / 4e-17 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.009G034300 [exp] 54 / 2e-10 AT2G29125 64 / 9e-15 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.010G226250 [exp] 53 / 2e-10 AT2G36985 67 / 3e-17 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.008G035900 [exp] 52 / 3e-10 AT2G36985 66 / 1e-16 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.010G201700 [exp] 51 / 1e-09 AT2G39705 72 / 2e-18 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.008G057800 [exp] 50 / 4e-09 AT2G39705 84 / 8e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.002G235101 [exp] 47 / 2e-08 AT1G53708 75 / 1e-19 ROTUNDIFOLIA like 9 (.1) Potri.001G161200 [exp] 47 / 5e-08 AT1G53708 76 / 1e-19 ROTUNDIFOLIA like 9 (.1) Potri.003G073900 [exp] 47 / 5e-08 AT1G53708 81 / 9e-22 ROTUNDIFOLIA like 9 (.1) Potri.006G125600 [exp] 45 / 2e-07 AT2G36985 75 / 3e-20 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08137 [flax] [poplar] DVL DVL family
Representative CDS sequence Show only first row Show all	>Lus10001569 pacid=23154587 polypeptide=Lus10001569 locus=Lus10001569.g ID=Lus10001569.BGIv1.0 annot-version=v1.0 ATGGATGAGAAATGGAAGCTATCAAAGAGCTATTCAACCAAAAACACAGCTTCTGCATCTTGTAGCAGCAGCAGCAGTAATTTCAGAAGGAGTTTCTCTA CGAGGAACGCCAAAACGACGTCGTCGTCTTGTTCCTACTCTACCAACTCCCCGCCGCCGCCGCTTCGGAAAAGCTCCTCCCTCCGCGGCGGCGGCGGCGG AGCATCTTCAACCTCCACAAGCGGCGGGAATGGTGGGTCCCCGTCGTCAATAACGAGGAAATGCAGCAAAATGGCGAAAGAACACAAGGCCAGATTCTAC ATTGTCAAGCGCTGCGTCGCCATGCTCGTCTGCTGGCATAAGCACGGCGGCGACCGTTGA
AA sequence Show only first row Show all	>Lus10001569 pacid=23154587 polypeptide=Lus10001569 locus=Lus10001569.g ID=Lus10001569.BGIv1.0 annot-version=v1.0 MDEKWKLSKSYSTKNTASASCSSSSSNFRRSFSTRNAKTTSSSCSYSTNSPPPPLRKSSSLRGGGGGASSTSTSGGNGGSPSSITRKCSKMAKEHKARFY IVKRCVAMLVCWHKHGGDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	0	1
					Lus10021792 [exp]	2.8	0.8963
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	4.9	0.8847
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	7.9	0.8834
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	9.7	0.8797
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	10.2	0.8711
AT5G08540			unknown protein		Lus10017363 [exp]	11.7	0.8820
AT4G35160			O-methyltransferase family pro...		Lus10025098 [exp]	13.0	0.8719
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	13.2	0.8758
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10032094 [exp]	16.4	0.8431
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	17.1	0.8481

Compare expression of checked genes

Lus10001569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.