Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44065 205 / 4e-67 Ribosomal protein L2 family (.1.2) ATCG01310 113 / 1e-30 ATCG01310.1, RPL2.2 ribosomal protein L2 (.1) ATCG00830 113 / 1e-30 ATCG00830.1, RPL2.1 ribosomal protein L2 (.1) AT3G51190 86 / 4e-20 Ribosomal protein L2 family (.1) AT4G36130 78 / 2e-17 Ribosomal protein L2 family (.1) AT2G18020 77 / 7e-17 EMB2296 embryo defective 2296, Ribosomal protein L2 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004973 [exp] 348 / 5e-115 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10001687 [exp] 108 / 3e-29 ATCG00830 281 / 3e-96 ribosomal protein L2 (.1) Lus10025966 [exp] 78 / 3e-17 AT4G36130 499 / 0.0 Ribosomal protein L2 family (.1) Lus10028468 [exp] 78 / 4e-17 AT4G36130 495 / 4e-180 Ribosomal protein L2 family (.1) Lus10041923 [exp] 76 / 2e-16 AT4G36130 502 / 0.0 Ribosomal protein L2 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007700 [exp] 246 / 2e-83 AT2G44065 200 / 3e-65 Ribosomal protein L2 family (.1.2) Potri.007G142200 [exp] 241 / 4e-81 AT2G44065 197 / 4e-64 Ribosomal protein L2 family (.1.2) Potri.013G137077 [exp] 108 / 7e-30 ATCG01310 243 / 2e-82 ribosomal protein L2 (.1) Potri.007G013101 [exp] 77 / 5e-17 AT4G36130 493 / 3e-179 Ribosomal protein L2 family (.1) Potri.007G013000 [exp] 77 / 5e-17 AT4G36130 493 / 3e-179 Ribosomal protein L2 family (.1) Potri.005G115700 [exp] 77 / 5e-17 AT4G36130 492 / 5e-179 Ribosomal protein L2 family (.1) Potri.011G074401 [exp] 76 / 3e-16 ATCG01310 376 / 2e-131 ribosomal protein L2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF03947 [flax] [poplar] Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001572 pacid=23154589 polypeptide=Lus10001572 locus=Lus10001572.g ID=Lus10001572.BGIv1.0 annot-version=v1.0 ATGGCTCTATGGAGAGCTCGAGCAGCTTCGTCTTCCCTCCTCAGTCGGTTCCTGCAACCCGTGAATCGCTCCTCCGCCGCCGTAGATGGCAGCAGCAACA CTGCACACCGCTATTTCTCCATCTCCGCCGATGCAGCAGCCGATGCAAACACACTGAAGGAAACGATGAAGAGAGAGCTCCTCCACCTCGACATCAACTC ACAAACGGGAAGCAACATGCCCCTCTCTTCAATGCGAATCGGAACAATAATCCACAACATCGAGATGCGACCTGGTCAAGGTGGAAAGCTAGTTCGAGCC GCGGGGACTTGTGCCAAGATCATGAAAGAGCCGACAAACAAATACTGCGTGATAAAACTACCTTCCGGTGCGGAGAAAGTTATCGATTCCAGCTGCAGGG CGACGGTTGGTGTCGTGTCGAACGCCAGCCACGGAGCTAAGAAGCTTAGGAAGGCCGGGCATAGTCGGTGGCTAGGGAGGAGACCGGTGGTTCGAGGAGT GGCTATGAATCCGGTTGATCATCCGCACGGTGGTGGTGAAGGTAAGAGCAAGAGTAGCGGTAAGTTTGGCGGAGTTTCGAGGACTCCGTGGGGGAAGCCG ACGAAATCTGGGTACAAGACTGGTCCGCTCAAGCGAAAGAAGTGA
AA sequence Show only first row Show all	>Lus10001572 pacid=23154589 polypeptide=Lus10001572 locus=Lus10001572.g ID=Lus10001572.BGIv1.0 annot-version=v1.0 MALWRARAASSSLLSRFLQPVNRSSAAVDGSSNTAHRYFSISADAAADANTLKETMKRELLHLDINSQTGSNMPLSSMRIGTIIHNIEMRPGQGGKLVRA AGTCAKIMKEPTNKYCVIKLPSGAEKVIDSSCRATVGVVSNASHGAKKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKFGGVSRTPWGKP TKSGYKTGPLKRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44065			Ribosomal protein L2 family (....		Lus10001572 [exp]	0	1
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	2.0	0.9396
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	2.2	0.9436
AT5G20600			unknown protein		Lus10027609 [exp]	9.0	0.9378
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	9.4	0.9376
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10010196 [exp]	9.8	0.9070
AT1G74470			Pyridine nucleotide-disulphide...		Lus10008405 [exp]	10.8	0.9090
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	11.6	0.9329
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	11.8	0.9292
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	14.5	0.9203
AT5G55140			ribosomal protein L30 family p...		Lus10004595 [exp]	15.9	0.9282

Compare expression of checked genes

Lus10001572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.