Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59480 322 / 9e-109 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G02230 266 / 4e-87 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT3G62040 234 / 4e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G59490 232 / 7e-74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G32150 202 / 4e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004971 [exp] 456 / 3e-161 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 389 / 2e-134 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 387 / 3e-134 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10024382 [exp] 273 / 6e-89 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10010848 [exp] 269 / 1e-87 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028107 [exp] 262 / 7e-85 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10009256 [exp] 228 / 2e-72 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10038016 [exp] 226 / 8e-71 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004914 [exp] 203 / 2e-62 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242300 [exp] 336 / 5e-114 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.006G086900 [exp] 285 / 4e-94 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 280 / 3e-91 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.014G110800 [exp] 237 / 3e-75 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G185300 [exp] 235 / 1e-74 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G089300 [exp] 212 / 6e-66 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G151700 [exp] 201 / 6e-62 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001574 pacid=23154577 polypeptide=Lus10001574 locus=Lus10001574.g ID=Lus10001574.BGIv1.0 annot-version=v1.0 ATGGAGTACGGAAATGGTGAGCATCGAGACGGTTTGAGCCAGAAATATGACTGTCTCCTTTTCGATCTGGATGACACTCTTTATCCATTGAGCTCTGGTT TAGCTCCACAAGTCGCCAGCAACATTCAAGAGTATATGATTGAGAAACTTGGCATCCCTGAAGATAAAGTTACAGCATTGTGTCTTTCTCTTTACAAATA CTATGGCACTACGATGGCTGGTCTCCGGGCCATCGGTTATAAGTTCGACTATGATGACTGCCACAGTTTTATCCATGGACGATTGCCTTACGATACACTG AAGCCGGATCCTGTTCTCAGAAGTCTCTTGCACAGCTTGCCAATCCGGAAAGTGATATTCACCAACGCGGATAAAGCACATGCCGAGGAGGCGCTCAGCA GGCTAGGATTGGAGGATTGCTTCGAACAGATACTTTGCTTCGAGAGCTTAAACGATTCCTCGAAAGGGAAAGAAACTGTGGATGAAGGTTCAACTGAAAT CTTCGACATCAATGAGTACAGTGCTTCTCCTAATGCTGGCTTATCACTTCCCAAAACACCTGTCGTCTGCAAACCTTTCGACGAAGCTTATAAGGAGGTT TTCAAGCTTGCTTCCATCAACCCTCATCGCACGGTGTTCTTCGATGACAGCCTTCGGAATATCCAAACTGGAAAAAGATTGGGGCTTCGTATGGGTATCC ATCACTCGACAATGTTTCATATTTGTAAATCTTTTATCCATGGACGATTGCCTTACGATACACTGAAGCCGGATCCTGTTCTCAGAAGTCTCTTGCACAG CTTGCCAATCCGGAAAGTGATATTCACCAACGCGGATAAAGCACATGCCGAGGAGGCGCTCAGCAGGCTAGGATTGGAGGATTGCTTCGAACAGATACTT TGCTTCGAGAGCTTAAACGATTCCTCGAAAGGGAAAGAAACTGTGGATGAAGGTTCAACTGAAATCTTCGACATCAATGAGTACAGTGCTTCTCCTAATG CTGGCTTATCACTTCCCAAAACACCTGTCGTCTGCAAACCTTTCGACGAAGCTTATAAGGAGGTTTTCAAGCTTGCTTCCATCAACCCTCATCGCACGGT GTTCTTCGATGACAGCCTTCGGAATATCCAAACTGGAAAAAGATTGGGGCTTCGTATGGGTGTCGACCATGCATTGGAGAGCATCCATAACATCAAGGAA GCATTGCCGGAGCTGTGGGATATGGCGGTCATGGATAAAACAGAAGGACTCAGTTACTCCACAAAGGTCGCAATTGAGGCCGAAGTGCAGGCCTAG
AA sequence Show only first row Show all	>Lus10001574 pacid=23154577 polypeptide=Lus10001574 locus=Lus10001574.g ID=Lus10001574.BGIv1.0 annot-version=v1.0 MEYGNGEHRDGLSQKYDCLLFDLDDTLYPLSSGLAPQVASNIQEYMIEKLGIPEDKVTALCLSLYKYYGTTMAGLRAIGYKFDYDDCHSFIHGRLPYDTL KPDPVLRSLLHSLPIRKVIFTNADKAHAEEALSRLGLEDCFEQILCFESLNDSSKGKETVDEGSTEIFDINEYSASPNAGLSLPKTPVVCKPFDEAYKEV FKLASINPHRTVFFDDSLRNIQTGKRLGLRMGIHHSTMFHICKSFIHGRLPYDTLKPDPVLRSLLHSLPIRKVIFTNADKAHAEEALSRLGLEDCFEQIL CFESLNDSSKGKETVDEGSTEIFDINEYSASPNAGLSLPKTPVVCKPFDEAYKEVFKLASINPHRTVFFDDSLRNIQTGKRLGLRMGVDHALESIHNIKE ALPELWDMAVMDKTEGLSYSTKVAIEAEVQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10001574 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029368 [exp]	10.2	0.9465
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	11.0	0.9212
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	17.5	0.9428
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	20.3	0.9354
AT1G14550			Peroxidase superfamily protein...		Lus10024208 [exp]	23.9	0.9332
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	27.0	0.9341
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	30.0	0.9287
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	34.7	0.9312
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10027752 [exp]	39.7	0.9306
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	45.1	0.8999

Compare expression of checked genes

Lus10001574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.