Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21270 256 / 2e-84 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT2G29070 254 / 2e-83 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G38930 236 / 1e-76 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G15420 74 / 2e-14 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004970 [exp] 382 / 2e-133 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10018057 [exp] 239 / 6e-77 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 219 / 3e-69 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 123 / 4e-32 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10015140 [exp] 74 / 1e-14 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10031538 [exp] 74 / 2e-14 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242200 [exp] 294 / 4e-99 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.004G163200 [exp] 255 / 5e-84 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.009G124900 [exp] 246 / 2e-80 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.014G156300 [exp] 65 / 1e-11 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF03152 [flax] [poplar] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Lus10001575 pacid=23154578 polypeptide=Lus10001575 locus=Lus10001575.g ID=Lus10001575.BGIv1.0 annot-version=v1.0 ATGAAAACACTTGAGCAAAAACTTCCCTCCTTCATCATCTTCTTCTTCTTCACTCAAACGACTGCACACTGGAGCTGCTCGTCAACCGCCGATCAGTTCC TCCGACGATTTGATCCAACTGTCGATTCAATCTCGCCGCTCAGATTCGTTCTCGAAGATCGCCATGAAACTTCAAGTGCAACATTTGAGCAGTACTATCG CTGCTACCCTGTTGCTTTCCTGGATAAGCCTCATCTGGAGAAAGGACACACAGTGATCATGCCACCATCAGCTCTAGAACGCCTTGCTAAGCTTCATTTT GATTACCCTATGCTATTTGAACTCCATAACACTTCTATTGAGCGAGTGACACACTGCGGAGTTCTCGAATTCGTCGTGGAAGAGGGTCTCATCTACTTGC CTTACTGGATGAGAAACGCCAGCCTCGAAAAGGGGACTTACGTCAAGCTGCAGCCGCATTCGAAGGACTTCTTAGATGTTTCCAACCCCAAACCAATATT GGAGACTTCATTAAGGAATTACTCTTGTCTGACCACCGGCAACACCATCATGGTTGCGTACAACAACAAGTTCTACATCAATATCGTCGAGGCGAAACCT TCTTTCGCACCGAACAAGGCGCCACCTGCAGATGTAGAGGAGGAGCCTCCATTGAAGAAGAAGAAGGTTGATGCTTTTAGCGGTTCAGCTAGGTGCCTCG ATGGGAAAGAATCAACAGAACCAGCAACTGCATCAACTACATGTTCTCCGGTCGAACATTGTCAGATTGAAGCCAAAGAAATCTGCAATGATACCAAGTC ATCCGCAGTCCCTTCTGCTTCGGCCAGGCAGCAGTCTGGGAAACTGATCTTTGGCGCGAACAAGAACCGGTCCGGAGATGAAACTGATCTTTGCCGTTAA
AA sequence Show only first row Show all	>Lus10001575 pacid=23154578 polypeptide=Lus10001575 locus=Lus10001575.g ID=Lus10001575.BGIv1.0 annot-version=v1.0 MKTLEQKLPSFIIFFFFTQTTAHWSCSSTADQFLRRFDPTVDSISPLRFVLEDRHETSSATFEQYYRCYPVAFLDKPHLEKGHTVIMPPSALERLAKLHF DYPMLFELHNTSIERVTHCGVLEFVVEEGLIYLPYWMRNASLEKGTYVKLQPHSKDFLDVSNPKPILETSLRNYSCLTTGNTIMVAYNNKFYINIVEAKP SFAPNKAPPADVEEEPPLKKKKVDAFSGSARCLDGKESTEPATASTTCSPVEHCQIEAKEICNDTKSSAVPSASARQQSGKLIFGANKNRSGDETDLCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10001575 [exp]	0	1
AT2G23770			protein kinase family protein ...		Lus10016794 [exp]	12.2	0.8918
AT1G80170			Pectin lyase-like superfamily ...		Lus10026798 [exp]	18.2	0.8722
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10042026 [exp]	41.3	0.8536
AT5G27950			P-loop containing nucleoside t...		Lus10033849 [exp]	41.7	0.8529
AT5G07950			unknown protein		Lus10021622 [exp]	52.0	0.8506
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	58.9	0.8513
AT4G04955		ATALN	allantoinase (.1)		Lus10018186 [exp]	65.5	0.8432
AT5G58160			actin binding (.1)		Lus10036612 [exp]	75.7	0.8462
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10014363 [exp]	85.3	0.8450
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10017223 [exp]	88.5	0.8088

Compare expression of checked genes

Lus10001575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.