Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29040 549 / 0 Exostosin family protein (.1) AT2G20370 532 / 0 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G32750 493 / 6e-170 Exostosin family protein (.1) AT4G13990 484 / 2e-166 Exostosin family protein (.1) AT2G32740 426 / 3e-144 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 423 / 3e-143 Exostosin family protein (.1) AT5G62220 351 / 1e-114 ATGT18 glycosyltransferase 18 (.1) AT5G41250 350 / 9e-114 Exostosin family protein (.1) AT1G63450 333 / 9e-106 RHS8 root hair specific 8 (.1) AT1G68470 323 / 2e-104 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004967 [exp] 1070 / 0 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 726 / 0 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 536 / 0 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 533 / 0 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10006694 [exp] 514 / 1e-177 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10010677 [exp] 484 / 2e-166 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10001028 [exp] 481 / 2e-165 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 476 / 2e-163 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10007037 [exp] 450 / 6e-154 AT4G13990 540 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032500 [exp] 623 / 0 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 547 / 0 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.014G147800 [exp] 525 / 0 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 518 / 1e-179 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.012G130700 [exp] 344 / 6e-112 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G105300 [exp] 340 / 2e-109 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.001G382200 [exp] 327 / 9e-106 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.015G132600 [exp] 328 / 1e-105 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G381900 [exp] 322 / 1e-103 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G120800 [exp] 271 / 1e-84 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10001578 pacid=23154575 polypeptide=Lus10001578 locus=Lus10001578.g ID=Lus10001578.BGIv1.0 annot-version=v1.0 ATGGAGATGCTTGTCGGTACCCGCATCAGATTCTGGTATTTCATATTGGTCATCTTCGTCGTCTGGATCTTCCTCCTCGCCGCCTATTTCTCCAGCACCG CCGTTAATGGCGGAGGAGGAGGAAGCCAATTCAGTCCCAAATCAATTTCTACCGACCGGAAAATCGCCGGCGAGATCCATGAAACAGGGGATAAAAAAAC AGAGGATCGTCAATCATCCGATGAGGAGCTTTACCCAATCAATTCCACCGTCGAGAATTTCTTCATCGGCGGCGAATGGGATAAGTATCTCCAGCAGGAG GAGCAAAACCAACAGAATAATCCGGTGAAGCCGATCATCCACCACCACCGGCCCAACAACCGGCCAAATACCATCAGGCCTAAACCAGCAGCTACCGTCG TTCCGTTACCGGAGAACAGTGCCGATGAATGCTCGGGGAAGTACATCTACGTCCATGAAATCCCGAGCAGTTTCAATTCCGACGTTCTGTTACATTGCCG GACGTTGAGCAAATGGATGAACATGTGTCCTTATCTATCAAATTTGGGATTAGGTCAACAGATTCCGAATTCTGACGCGAAAGTTGTATCGAATTCAGGA TGGTACGAGACGAATCAATTCGCTCTCGAAGTGATCTTCCACAACCGGATGAAACAATACAAATGCTTGACATCCGATTCGACAAAGGCGGCGGCGATCT TCGTTCCGTACTATGCCGGACTCGAAGTGGCTCGATATCTATGGAGTAGTAATCGATTAATGCGCGATCATTACTCGACCGAGCTGATCAAATGGATTCG GGGAAAGCCGGAGTGGGGCCGGATGTTCGGGAGGGATCATTTCATGGTTGCGGGGAGGATCAGCTGGGATTTCCGAAGATTGACGGAGAAAGACGACGAT TGGGGGAACAAGCTGATGGTTCTGCCCGAATCGAAGAACATGACGATGCTGACGATCGAATCAAGCCCCTGGAACGGGAACGATTTCGCAATTCCGTATC CGACCGATTTCCACCCCTCGAGCGATAATCAAGTGACCGAATGGCAACGGAGGATGAGGAGGATGAAGAGGAGGATTCTGTTCTCCTTCGCGGGAGCTCC GAGGCCGGATTTGAAGAATTCGATCCGGAACGAGATAATCGAGCAGTGCAAATCAGCAAACAAGAAGTGCCAGCTGCTCGGTTGCCAACCCGGTTCGAAG AAATGCGACGACCCGAGCAATTTGTTGAGGATGTTTCAAGGGTCGGTTTTCTGTCTCCAGCCGGCTGGAGACTCGTACACTCGGAGATCGACGTTCGACT CAATCCTGGCCGGGTGTATCCCTGTCTTTTTCCATCCTGGTTCCGCCTACGTGCAGTATCTATGGCACTTCCCCAAGGATTACACAAAATACTCCGTGTT CATCCCGGGGGATGAAGTCAAAGAAGGGAACGCCAACATCGAGAGGATACTATCGAGGATATCAAAGCAGAGAGTGGCAGCGATGAGGGAGCAAGTGATC AAGCTGATACCAGGAATTGTCTATGCCGATCCCCGGTCAAATTTGGAGAATTTTGAGGACGCATTCGACATAACGGTGGACGGTGTTTTGGAGAGGATTG AAGAGATGAGGAAGAATTTGAAGGAAGGAAAGATTTTGGAAGCGAGTGAGGAAGAAGAGGAGATGAATTGGAAGAAGTCGGTTTTCGGGAATGTCGGAAA GCCTCATCCTTGGGATCATTTCTTTATTAGAGAGAAGGAGTGGAATCATCAGGGTGAAGGTGTTAATTTTCGAGCTAATTGA
AA sequence Show only first row Show all	>Lus10001578 pacid=23154575 polypeptide=Lus10001578 locus=Lus10001578.g ID=Lus10001578.BGIv1.0 annot-version=v1.0 MEMLVGTRIRFWYFILVIFVVWIFLLAAYFSSTAVNGGGGGSQFSPKSISTDRKIAGEIHETGDKKTEDRQSSDEELYPINSTVENFFIGGEWDKYLQQE EQNQQNNPVKPIIHHHRPNNRPNTIRPKPAATVVPLPENSADECSGKYIYVHEIPSSFNSDVLLHCRTLSKWMNMCPYLSNLGLGQQIPNSDAKVVSNSG WYETNQFALEVIFHNRMKQYKCLTSDSTKAAAIFVPYYAGLEVARYLWSSNRLMRDHYSTELIKWIRGKPEWGRMFGRDHFMVAGRISWDFRRLTEKDDD WGNKLMVLPESKNMTMLTIESSPWNGNDFAIPYPTDFHPSSDNQVTEWQRRMRRMKRRILFSFAGAPRPDLKNSIRNEIIEQCKSANKKCQLLGCQPGSK KCDDPSNLLRMFQGSVFCLQPAGDSYTRRSTFDSILAGCIPVFFHPGSAYVQYLWHFPKDYTKYSVFIPGDEVKEGNANIERILSRISKQRVAAMREQVI KLIPGIVYADPRSNLENFEDAFDITVDGVLERIEEMRKNLKEGKILEASEEEEEMNWKKSVFGNVGKPHPWDHFFIREKEWNHQGEGVNFRAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29040			Exostosin family protein (.1)		Lus10001578 [exp]	0	1
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	5.1	0.9272
					Lus10003825 [exp]	7.2	0.9249
AT5G56990			unknown protein		Lus10029528 [exp]	8.8	0.9249
					Lus10004902 [exp]	9.8	0.7467
					Lus10038051 [exp]	10.2	0.9249
AT5G01660			unknown protein		Lus10040599 [exp]	11.4	0.9249
					Lus10008923 [exp]	12.1	0.7397
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	12.5	0.9249
					Lus10029261 [exp]	13.5	0.9249
AT4G27290			S-locus lectin protein kinase ...		Lus10039733 [exp]	14.1	0.7087

Compare expression of checked genes

Lus10001578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.