Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34280 46 / 3e-05 F-box and associated interaction domains-containing protein (.1) AT3G07870 45 / 8e-05 F-box and associated interaction domains-containing protein (.1) AT2G43260 44 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT3G06240 44 / 0.0002 F-box family protein (.1) AT1G62270 41 / 0.0009 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003692 [exp] 467 / 2e-166 AT3G26010 54 / 4e-08 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003693 [exp] 184 / 1e-57 ND / Lus10006403 [exp] 47 / 2e-05 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10039024 [exp] 46 / 3e-05 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10013872 [exp] 46 / 4e-05 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10031020 [exp] 45 / 5e-05 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10012355 [exp] 45 / 6e-05 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 44 / 0.0001 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 44 / 0.0001 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G093100 [exp] 186 / 4e-55 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) Potri.019G062900 [exp] 172 / 9e-50 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.004G000900 [exp] 58 / 5e-09 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G144000 [exp] 52 / 5e-07 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 49 / 2e-06 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 46 / 3e-05 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 44 / 0.0001 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.008G216223 [exp] 44 / 0.0002 AT3G07870 93 / 4e-21 F-box and associated interaction domains-containing protein (.1) Potri.006G011400 [exp] 43 / 0.0004 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G215901 [exp] 42 / 0.0005 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001579 pacid=23169274 polypeptide=Lus10001579 locus=Lus10001579.g ID=Lus10001579.BGIv1.0 annot-version=v1.0 ATGGTAACACTATATAGTATAAACTCGAGCTTCGTCATCAACACTCTCCTCCGCCTCCCCCCGAGATCCCTCTTCCGGTTCAAGTCCGTCTCCAAGTCAT GGTACGTCGTGATCTCCTGCCGGAAGTTCCGAGACAAGTACTACTCCTTACGAGCCGCCGGCGTCCGGCGCTTCCTCTTCCAGGCTTCCGACTATGACTA CCACCCTCCGTCCCTCACCGGCTTCCACACCTTTGTCACCGTCGACTGCCTTGGAATCCCCCGCGACGTCCTCACCGTCGGCCTCGTCCCCGGCTCGATC AAGCTCGTCCTCCCCAGCTGCCGGGGCGTTTTCTGCTTCCCCACCGCGAATTCCGCCTATCTCTGTAACCCCGCCGCACATTCCATCCTCCCGCTGCCGC CTCCGGTCGACCAGTCCGACCGGAATCCGGTTACAGCGTTCGGATTCGGGTACGTGAAGTCGACAGAGGAGTACAAGGTGGTGAGACTGCAATACAATGC GCCTTCGAATTCAAATTCGAATTTGAAAAGTTTGCGAAATTGCAGAGTGGAATCCTCTGTTTTCACCTATCCTACAAAGGGAGGAGCTTTAACTAATGCT TGGAGAGCTTTGAAGGAAGTATGCCCTTACTTTGTGGAGGAGTTCGGGTTACCAGTTTTCGTGCAGGGGAACGAGACGGTCTACTGGAAGATCGACCACA GACGAACTAACGAAGCGGTGGAAAACAACAATGAGGATTTCCTCGTGGCGTTCAACATCAACGAGGAGAGGTTTGGTGTGGTGCGGAGGCCGGAAGGATG GATGCCGAGTTCGGGAAGCTGGACGAGGCTGATGGAGGCCGAGCGTATCAGCAAAGTGTGCATGGTCGAAACCTTGACGCATCAGGATTGCTTAATCATA TGGATTCTTGCTGACCAGAAGAGCAGCCACTGGGTGAAGCGAGAAGTCATCAAGCTGCCTTGTTTCGGAGAAGGATTCGTTGTCGGAGACATCAAGGCAA TCTGGAGCGACGGGATCCTGCTGAGCTCGGCTGACAATGTGATGATCTTCTATAATCCTCGGAGTAGGACGTTCAAGAAGGTGAAGGTTCCGGAAGGCTT GGAGAACTGCGGTTTCAGCCTTTACGCCGAAAGTCTCGTGACCTTACGAGCCCCGGCTTAA
AA sequence Show only first row Show all	>Lus10001579 pacid=23169274 polypeptide=Lus10001579 locus=Lus10001579.g ID=Lus10001579.BGIv1.0 annot-version=v1.0 MVTLYSINSSFVINTLLRLPPRSLFRFKSVSKSWYVVISCRKFRDKYYSLRAAGVRRFLFQASDYDYHPPSLTGFHTFVTVDCLGIPRDVLTVGLVPGSI KLVLPSCRGVFCFPTANSAYLCNPAAHSILPLPPPVDQSDRNPVTAFGFGYVKSTEEYKVVRLQYNAPSNSNSNLKSLRNCRVESSVFTYPTKGGALTNA WRALKEVCPYFVEEFGLPVFVQGNETVYWKIDHRRTNEAVENNNEDFLVAFNINEERFGVVRRPEGWMPSSGSWTRLMEAERISKVCMVETLTHQDCLII WILADQKSSHWVKREVIKLPCFGEGFVVGDIKAIWSDGILLSSADNVMIFYNPRSRTFKKVKVPEGLENCGFSLYAESLVTLRAPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40920			F-box and associated interacti...		Lus10001579 [exp]	0	1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10032764 [exp]	3.9	0.7518
					Lus10028987 [exp]	5.5	0.7101
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	6.0	0.7095
AT5G11090			serine-rich protein-related (....		Lus10038101 [exp]	8.0	0.6546
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032586 [exp]	11.6	0.7131
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10017291 [exp]	15.0	0.7131
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10026650 [exp]	22.1	0.6944
					Lus10030382 [exp]	23.2	0.6930
					Lus10035698 [exp]	25.4	0.6507
AT1G73440			calmodulin-related (.1)		Lus10009280 [exp]	30.2	0.6467

Compare expression of checked genes

Lus10001579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.