Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40830 169 / 5e-52 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 148 / 6e-44 RING/U-box superfamily protein (.1.2.3) AT3G10815 122 / 4e-35 RING/U-box superfamily protein (.1) AT3G19950 113 / 4e-30 RING/U-box superfamily protein (.1) AT1G60360 110 / 3e-29 RING/U-box superfamily protein (.1) AT3G46620 101 / 2e-25 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G39720 100 / 5e-25 RHC2A RING-H2 finger C2A (.1) AT5G59550 100 / 9e-25 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G68180 91 / 2e-22 RING/U-box superfamily protein (.1) AT3G13430 91 / 6e-22 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003698 [exp] 257 / 1e-86 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 165 / 2e-50 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 163 / 8e-50 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 119 / 5e-33 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10025612 [exp] 114 / 1e-30 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 114 / 2e-30 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10022967 [exp] 112 / 3e-30 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10024372 [exp] 110 / 6e-29 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 107 / 6e-28 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G032100 [exp] 192 / 4e-61 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.016G029300 [exp] 179 / 4e-56 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.002G085800 [exp] 126 / 5e-35 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 114 / 1e-30 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.012G126700 [exp] 112 / 5e-30 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 111 / 2e-29 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 110 / 3e-29 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 108 / 7e-29 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.008G058100 [exp] 110 / 8e-29 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G127600 [exp] 108 / 2e-28 AT1G68180 158 / 1e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10001582 pacid=23169281 polypeptide=Lus10001582 locus=Lus10001582.g ID=Lus10001582.BGIv1.0 annot-version=v1.0 ATGTTTGGCAGCCAAATCCCATTTCGGGTTGAAACTAGCCGGTTTGGCACTCGTGGGAACACACTGCTGGAAGAACTGTTTGAGCAGCTCTCTGCAAGCA ACAGGCGTGGACCAAAGCCGGCATCCAGATCAGCAATCGATGCAATGCCTACAGTCAGGATAACTCATAGGCACCTCCGGACAGATTCGCACTGTCCAGT ATGCAAGGATGAGTTCGAATTGGGATCCGAAGCGAGACAGATGCCGTGCAACCACATATACCACACTGACTGCATCGTCCCCTGGCTGGTACAGCATAAC TCGTGCCCCGTGTGTCGCCAGGAGCTCTCCTCATCCTTACCGGGCTCAAGCTCGAGATCAAGTAACCATAGCAGCAACTCGTACGTAAGGGAAGACAGTG ACAGAGAAAGCTGGAGGAATCCTTTCTCTTCGATGTGGCAATTCGATTCGAGCTCTAACCACGAAGATCCTGCCGCGGGAAGCAGCTCGACGACTATGAA TATGAACAGAGTGATCATCATCACCAAATGGGGTATTCAGGGTGGCCTTTTGATTAGGGTTGGTTGCTTCCCAATATGCTAG
AA sequence Show only first row Show all	>Lus10001582 pacid=23169281 polypeptide=Lus10001582 locus=Lus10001582.g ID=Lus10001582.BGIv1.0 annot-version=v1.0 MFGSQIPFRVETSRFGTRGNTLLEELFEQLSASNRRGPKPASRSAIDAMPTVRITHRHLRTDSHCPVCKDEFELGSEARQMPCNHIYHTDCIVPWLVQHN SCPVCRQELSSSLPGSSSRSSNHSSNSYVREDSDRESWRNPFSSMWQFDSSSNHEDPAAGSSSTTMNMNRVIIITKWGIQGGLLIRVGCFPIC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10001582 [exp]	0	1
AT3G56580			RING/U-box superfamily protein...		Lus10001583 [exp]	1.4	0.8589
AT5G43950			Plant protein of unknown funct...		Lus10024955 [exp]	4.9	0.8373
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	5.9	0.8268
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	6.0	0.8333
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	9.2	0.8195
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	11.5	0.7797
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Lus10019225 [exp]	13.7	0.7923
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10009467 [exp]	15.9	0.7985
AT4G27610			unknown protein		Lus10043458 [exp]	15.9	0.8275
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	16.2	0.8051

Compare expression of checked genes

Lus10001582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.