Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14820 303 / 1e-104 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G01630 150 / 2e-44 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 69 / 1e-13 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G08690 64 / 1e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75170 63 / 2e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G19650 61 / 2e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47730 61 / 2e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 57 / 3e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G55840 56 / 5e-09 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 56 / 6e-09 ATSFH12 SEC14-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003699 [exp] 449 / 2e-162 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 323 / 4e-113 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10021817 [exp] 193 / 1e-61 AT1G14820 164 / 3e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10022428 [exp] 153 / 1e-45 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 151 / 7e-45 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 150 / 8e-45 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 144 / 4e-42 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041206 [exp] 66 / 3e-12 AT1G05370 532 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10021919 [exp] 65 / 9e-12 AT1G05370 522 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135600 [exp] 364 / 7e-129 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 353 / 1e-124 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 282 / 1e-96 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G068000 [exp] 161 / 7e-49 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 159 / 5e-48 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 152 / 5e-45 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.010G105100 [exp] 129 / 4e-38 AT1G14820 113 / 3e-32 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G080100 [exp] 71 / 3e-14 AT5G63060 318 / 3e-110 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G123200 [exp] 63 / 2e-11 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 61 / 6e-11 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10001584 pacid=23169289 polypeptide=Lus10001584 locus=Lus10001584.g ID=Lus10001584.BGIv1.0 annot-version=v1.0 ATGGAGAATCCAGGCGAAATGGCGCTTACCCAGATGAGGAAATCGGTTGAAAAGCTCGGCTCTACTACTGAGAAATATGGAGATCCGACGTTGGAGAGGT TTCTGATCGCGAGGGCGATGGACGCCGACAAGGCGGCGAAGATGTTTGTGGAGTGGTGGAAGTGGAGGGATTCGTTTGTTCCGGATGGGTTCATCTCGGA CTCTGAAGTCTCTGATGAACTGGTGATGGAGAAGGTTTTCTTGCAAGGGTTGACGACGGGTGGGTATCCTCTGGCGATCGTTAAAGCTAGCAAGCATTAC CCTTCCAAGGATCAGCTTCAGTTCAAAAAGTTCATTGTTCATTTGCTGGACAAAACCATTGCCAGCTCATTCAAGGGAAGAGAAATGGGAAACGAGAAGC TGGTAGCCATGTTGGACATGCAGCAACTTGCATACAAGAACGTCGATGCTCGTGGCCTCATCACCGGCTTTCAGTTCTTGCAGGCCTACTACCCGGAGCG TCTGCACAAGGTGTACATACTAAACATGCCGTGGTTCTTCGTGAACGTGTGGAAGGTAATATCGCGCTTCCTCGAGAAAGCGACGCTGGAGAAGGTAATG ATTGTGACTGACGAGGAGGAAAGAAGAGAGTTCGTGACCGAAGTAGGGGAAGAGACGTTGCCGGAAGAGTATGGAGGCCGAGCGAAGCTCGTGCCTGTTC AGGATGTCACGTTGCCTCCATTGGAGGTCTGA
AA sequence Show only first row Show all	>Lus10001584 pacid=23169289 polypeptide=Lus10001584 locus=Lus10001584.g ID=Lus10001584.BGIv1.0 annot-version=v1.0 MENPGEMALTQMRKSVEKLGSTTEKYGDPTLERFLIARAMDADKAAKMFVEWWKWRDSFVPDGFISDSEVSDELVMEKVFLQGLTTGGYPLAIVKASKHY PSKDQLQFKKFIVHLLDKTIASSFKGREMGNEKLVAMLDMQQLAYKNVDARGLITGFQFLQAYYPERLHKVYILNMPWFFVNVWKVISRFLEKATLEKVM IVTDEEERREFVTEVGEETLPEEYGGRAKLVPVQDVTLPPLEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	0	1
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	2.8	0.8772
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	3.2	0.8588
AT3G27030			unknown protein		Lus10041550 [exp]	4.9	0.8308
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	5.2	0.8267
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	5.7	0.8281
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	8.5	0.8125
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	10.5	0.8094
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	10.5	0.8241
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	13.9	0.8383
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10041630 [exp]	16.2	0.7614

Compare expression of checked genes

Lus10001584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.